RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA631796" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA631796 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2427250 2427250 PRJNA631796_P_NODE_1062_length_710_cov_2.221880_g815_i0 PRJNA631796 1062 710 2.22188 15.775348 Bacteria 2 Bacteria Bacteria 182 1.06e-50   NR WP_224605023.1 1656887 g815 i0 46.1 4.46619718309859 228 113 96.3 3 684 1 52 269 WP_224605023.1 S8 family peptidase [Deinococcus multiflagellatus] diamond 3171 182 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus multiflagellatus
29070599 29070599 PRJNA631796_S_NODE_132708_length_198_cov_3.087591_g132541_i0 PRJNA631796 132708 198 3.087591 6.11343018 Thermus oshimai 56957 Bacteria Bacteria 50.1 4.45e-6   NR GAA6761585.1 56957 g132541 i0 59.5 0.636363636363636 42 17 63.6 0 59 184 36 77 GAA6761585.1 hypothetical protein Thermus77923_23180 [Thermus oshimai] diamond 126 50.1 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;