RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA630877" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630877 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27238836 27238836 PRJNA630877_S_NODE_112863_length_201_cov_1.443750_g93726_i0 PRJNA630877 112863 201 1.44375 2.9019375 Jimgerdemannia flammicorona 994334 Fungi Fungi 42.7 0.0225   NR RUP52310.1 994334 g93726 i0 44.1 0.507462686567164 34 19 50.7 0 126 25 239 272 RUP52310.1 beta galactosidase [Jimgerdemannia flammicorona] diamond 102 42.7 1 Eukaryota Opisthokonta Fungi Mucoromycota Endogonomycetes Endogonales Endogonaceae Jimgerdemannia Jimgerdemannia flammicorona
27554542 27554542 PRJNA630877_S_NODE_84544_length_274_cov_23.819742_g65407_i0 PRJNA630877 84544 274 23.819742 65.26609308 Umbelopsis sp. PMI_123 1896174 Fungi Fungi 40.4 0.0377   NR KAH8549584.1 1896174 g65407 i0 73.1 0.284671532846715 26 5 26.3 1 273 202 27 52 KAH8549584.1 hypothetical protein BGW37DRAFT_403801, partial [Umbelopsis sp. PMI_123] diamond 78 40.4 1 Eukaryota Opisthokonta Fungi Mucoromycota Umbelopsidomycetes Umbelopsidales Umbelopsidaceae Umbelopsis Umbelopsis sp. PMI_123
32338336 32338336 PRJNA630877_S_NODE_117579_length_193_cov_27.335526_g98442_i0 PRJNA630877 117579 193 27.335526 52.75756518 root 1 Root_unresolved Root_unresolved 79 1.8e-15   NR CAG8817805.1 4874 g98442 i0 97.4 1565.34715025907 39 1 60.6 0 3 119 295 333 CAG8817805.1 31082_t:CDS:2 [Gigaspora margarita] diamond 302112 79 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;