RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Xenacoelomorpha"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Xenacoelomorpha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27586270 27586270 PRJNA630162_P_NODE_147984_length_165_cov_0.896552_g146461_i0 PRJNA630162 147984 165 0.896552 1.4793108 Symsagittifera roscoffensis 84072 Xenacoelomorpha other_Eukaryota 49.3 6.43e-5   NR XP_063712839.1 84072 g146461 i0 77.4 0.563636363636364 31 7 56.4 0 93 1 16 46 XP_063712839.1 COP9 signalosome complex subunit 2-like isoform X2 [Symsagittifera roscoffensis] diamond 93 49.3 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis
28861773 28861773 PRJNA630162_P_NODE_56548_length_234_cov_3.756757_g55025_i0 PRJNA630162 56548 234 3.756757 8.79081138 root 1 Root_unresolved Root_unresolved 55.1 1.49e-6   NR XP_063729754.1 84072 g55025 i0 38.4 3.32051282051282 73 45 93.6 0 12 230 1211 1283 XP_063729754.1 nephrocystin-3-like [Symsagittifera roscoffensis] diamond 777 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis
32243494 32243494 PRJNA630162_P_NODE_124318_length_172_cov_1.658537_g122795_i0 PRJNA630162 124318 172 1.658537 2.85268364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.4 0.0195   NR XP_063729754.1 84072 g122795 i0 45.3 5.61627906976744 53 29 92.4 0 12 170 1232 1284 XP_063729754.1 nephrocystin-3-like [Symsagittifera roscoffensis] diamond 966 42.4 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;