RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27270387 27270387 PRJNA630162_P_NODE_65303_length_219_cov_1.182353_g63780_i0 PRJNA630162 65303 219 1.182353 2.58935307 Rhodothermales bacterium 2306054 Bacteria Bacteria 85.9 1.47e-17   NR NNE46316.1 2306054 g63780 i0 79.5 0.602739726027397 44 9 60.3 0 218 87 351 394 NNE46316.1 hypothetical protein [Rhodothermales bacterium] diamond 132 85.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
27460086 27460086 PRJNA630162_P_NODE_161823_length_162_cov_0.920354_g160300_i0 PRJNA630162 161823 162 0.920354 1.49097348 Rhodothermales bacterium 2306054 Bacteria Bacteria 48.9 8.16e-5   NR HYE59421.1 2306054 g160300 i0 51.9 0.962962962962963 52 25 96.3 0 6 161 753 804 HYE59421.1 hypothetical protein [Rhodothermales bacterium] diamond 156 48.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
28817223 28817223 PRJNA630162_P_NODE_103488_length_183_cov_2.873134_g101965_i0 PRJNA630162 103488 183 2.873134 5.25783522 Rhodothermaceae bacterium 2026787 Bacteria Bacteria 71.6 1.11e-12   NR MAQ95730.1 2026787 g101965 i0 57.9 0.934426229508197 57 24 93.4 0 1 171 425 481 MAQ95730.1 hypothetical protein [Rhodothermaceae bacterium] diamond 171 71.6 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
31882283 31882283 PRJNA630162_P_NODE_169417_length_155_cov_2.283019_g167894_i0 PRJNA630162 169417 155 2.283019 3.53867945 Rhodothermales bacterium 2306054 Bacteria Bacteria 75.1 4.33e-14   NR HLA64784.1 2306054 g167894 i0 66 3.87096774193548 50 17 96.8 0 4 153 109 158 HLA64784.1 PAS domain S-box protein [Rhodothermales bacterium] diamond 600 75.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;