RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27396873 27396873 PRJNA630162_P_NODE_116303_length_176_cov_2.094488_g114780_i0 PRJNA630162 116303 176 2.094488 3.68629888 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 52.4 5.66e-6   NR XP_001304248.1 412133 g114780 i0 41.2 1.73863636363636 51 30 86.9 0 160 8 191 241 XP_001304248.1 ankyrin repeat family protein family [Trichomonas vaginalis G3] diamond 306 52.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30460280 30460280 PRJNA630162_P_NODE_157593_length_163_cov_0.912281_g156070_i0 PRJNA630162 157593 163 0.912281 1.48701803 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.2 2.11e-7   NR XP_068356941.1 1144522 g156070 i0 55.8 5.79754601226994 43 19 79.1 0 12 140 325 367 XP_068356941.1 Copine family protein [Tritrichomonas foetus] diamond 945 56.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32072191 32072191 PRJNA630162_P_NODE_148138_length_165_cov_0.896552_g146615_i0 PRJNA630162 148138 165 0.896552 1.4793108 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 65.1 1.64e-10   NR XP_067775788.1 135588 g146615 i0 61.2 0.890909090909091 49 19 89.1 0 148 2 125 173 XP_067775788.1 putative beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [Histomonas meleagridis] diamond 147 65.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;