RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Nemertea"

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tax_superkingdom 1

tax_phylum 1

  • Nemertea · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10806567 10806567 PRJNA630162_P_NODE_47869_length_255_cov_1.800971_g46346_i0 PRJNA630162 47869 255 1.800971 4.59247605 Opisthokonta 33154 Nemertea other_Eukaryota 92.8 5.98e-20   NR AKI85311.1 6221 g46346 i0 80.4 7.96470588235294 56 11 65.9 0 7 174 339 394 AKI85311.1 ribosomal protein L3, partial [Cerebratulus lacteus] diamond 2031 92.8 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Cerebratulus Cerebratulus lacteus
28533671 28533671 PRJNA630162_P_NODE_35987_length_298_cov_2.489960_g34464_i0 PRJNA630162 35987 298 2.48996 7.4200808 Lineus longissimus 88925 Nemertea other_Eukaryota 58.2 2.83e-7   NR XP_064621087.1 88925 g34464 i0 45.6 0.573825503355705 57 31 57.4 0 296 126 760 816 XP_064621087.1 uncharacterized protein LOC135483942 [Lineus longissimus] diamond 171 58.2 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus
31294084 31294084 PRJNA630162_P_NODE_89615_length_192_cov_1.433566_g88092_i0 PRJNA630162 89615 192 1.433566 2.75244672 Metazoa 33208 Nemertea other_Eukaryota 107 1.47e-25   NR XP_064646399.1 88925 g88092 i0 76.7 2.8125 60 14 93.8 0 184 5 342 401 XP_064646399.1 actin-related protein 3 [Lineus longissimus] diamond 540 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus
31914020 31914020 PRJNA630162_P_NODE_161777_length_162_cov_0.920354_g160254_i0 PRJNA630162 161777 162 0.920354 1.49097348 Lineus longissimus 88925 Nemertea other_Eukaryota 52 2.03e-6   NR XP_064641153.1 88925 g160254 i0 50 0.888888888888889 48 24 88.9 0 149 6 38 85 XP_064641153.1 large ribosomal subunit protein eL14-like [Lineus longissimus] diamond 144 52 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;