RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28628385 28628385 PRJNA630162_P_NODE_163207_length_161_cov_2.089286_g161684_i0 PRJNA630162 163207 161 2.089286 3.36375046 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 53.1 2.6e-6   NR NTV05183.1 2067991 g161684 i0 52.9 2.73913043478261 51 24 95 0 153 1 535 585 NTV05183.1 DUF4214 domain-containing protein [Chlorobiaceae bacterium] diamond 441 53.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
32420270 32420270 PRJNA630162_P_NODE_10339_length_595_cov_2.192308_g8923_i0 PRJNA630162 10339 595 2.192308 13.0442326 Chlorobiota bacterium 2268192 Bacteria Bacteria 87.4 1.97e-16   NR NOY38584.1 2268192 g8923 i0 41.8 2.21848739495798 110 48 47.4 1 313 594 4 113 NOY38584.1 radical SAM family heme chaperone HemW [Chlorobiota bacterium] diamond 1320 87.4 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;