RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29101790 29101790 PRJNA630162_P_NODE_117068_length_176_cov_1.401575_g115545_i0 PRJNA630162 117068 176 1.401575 2.466772 candidate division SR1 bacterium Aalborg_AAW-1 1643353 Bacteria Bacteria 53.5 2.12e-6   NR AKH32659.1 1643353 g115545 i0 65.7 0.596590909090909 35 12 59.7 0 126 22 126 160 AKH32659.1 Release factor glutamine methyltransferase [candidate division SR1 bacterium Aalborg_AAW-1] diamond 105 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium Aalborg_AAW-1
31629353 31629353 PRJNA630162_P_NODE_156616_length_163_cov_0.912281_g155093_i0 PRJNA630162 156616 163 0.912281 1.48701803 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 92.4 3.01e-20   NR HMS91269.1 2927939 g155093 i0 80.8 0.957055214723926 52 10 95.7 0 157 2 399 450 HMS91269.1 DnaB-like helicase C-terminal domain-containing protein [Candidatus Absconditabacterales bacterium] diamond 156 92.4 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium
32767412 32767412 PRJNA630162_P_NODE_95440_length_188_cov_2.251799_g93917_i0 PRJNA630162 95440 188 2.251799 4.23338212 candidate division SR1 bacterium 2044938 Bacteria Bacteria 52.4 7.2e-6   NR PZM87057.1 2044938 g93917 i0 41 0.973404255319149 61 35 97.3 1 6 188 354 413 PZM87057.1 MAG: hypothetical protein DLD55_03390 [candidate division SR1 bacterium] diamond 183 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;