RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA630162 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5705257 5705257 PRJNA630162_P_NODE_136085_length_168_cov_0.873950_g134562_i0 PRJNA630162 136085 168 0.87395 1.468236 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 106 5.6500000000000005e-27   NR MEQ1936243.1 2682144 g134562 i0 94.5 1.96428571428571 55 3 98.2 0 165 1 131 185 MEQ1936243.1 DNA repair protein RadC [Fimbriimonadaceae bacterium] diamond 330 106 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
21004211 21004211 PRJNA630162_P_NODE_150837_length_164_cov_1.521739_g149314_i0 PRJNA630162 150837 164 1.521739 2.49565196 Capsulimonas 2494209 Bacteria Bacteria 72 2.35e-15   NR WP_119322379.1 2494209 g149314 i0 94.6 0.676829268292683 37 2 67.7 0 139 29 1 37 WP_119322379.1 MULTISPECIES: 50S ribosomal protein L36 [Capsulimonas] diamond 111 72 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas  
27049136 27049136 PRJNA630162_P_NODE_142642_length_166_cov_1.512821_g141119_i0 PRJNA630162 142642 166 1.512821 2.51128286 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 46.6 5.7e-4   NR WP_025227811.1 1005039 g141119 i0 51.2 0.740963855421687 41 20 74.1 0 44 166 17 57 WP_025227811.1 hypothetical protein [Fimbriimonas ginsengisoli] diamond 123 46.6 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
27080637 27080637 PRJNA630162_P_NODE_118562_length_175_cov_1.658730_g117039_i0 PRJNA630162 118562 175 1.65873 2.9027775 Fimbriimonas sp. 1936159 Bacteria Bacteria 44.7 0.00313   NR HLO98283.1 1936159 g117039 i0 41.7 1.02857142857143 60 28 90.9 1 165 7 23 82 HLO98283.1 hypothetical protein [Fimbriimonas sp.] diamond 180 44.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
28533615 28533615 PRJNA630162_P_NODE_148167_length_165_cov_0.896552_g146644_i0 PRJNA630162 148167 165 0.896552 1.4793108 Armatimonas sp. 1872638 Bacteria Bacteria 81.3 1.7e-16   NR WP_395091726.1 1872638 g146644 i0 97.7 0.8 44 1 80 0 1 132 283 326 WP_395091726.1 sigma-70 family RNA polymerase sigma factor [Armatimonas sp.] diamond 132 81.3 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas sp.
30270661 30270661 PRJNA630162_P_NODE_82692_length_198_cov_3.228188_g81169_i0 PRJNA630162 82692 198 3.228188 6.39181224 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 82.8 1.44e-16   NR MCW3099995.1 2739509 g81169 i0 50 2.72727272727273 90 18 95.5 1 190 2 270 359 MCW3099995.1 hypothetical protein [Chthonomonadaceae bacterium] diamond 540 82.8 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
30807423 30807423 PRJNA630162_P_NODE_154294_length_163_cov_2.078947_g152771_i0 PRJNA630162 154294 163 2.078947 3.38868361 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 99.8 8.419999999999999e-23   NR MEQ1933157.1 2682144 g152771 i0 98.1 0.975460122699387 53 1 97.5 0 159 1 378 430 MEQ1933157.1 DNA-directed RNA polymerase subunit beta [Fimbriimonadaceae bacterium] diamond 159 99.8 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
31945546 31945546 PRJNA630162_P_NODE_60057_length_228_cov_0.843575_g58534_i0 PRJNA630162 60057 228 0.843575 1.923351 Armatimonadota bacterium 2033014 Bacteria Bacteria 49.3 1.47e-4   NR MEI7985577.1 2033014 g58534 i0 59.5 0.486842105263158 37 15 48.7 0 2 112 107 143 MEI7985577.1 hypothetical protein [Armatimonadota bacterium] diamond 111 49.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;