RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_clade = "sulfur-oxidizing symbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA630162 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27788472 27788472 PRJNA630162_P_NODE_77364_length_204_cov_5.574194_g75841_i0 PRJNA630162 77364 204 5.574194 11.37135576 Gammaproteobacteria 1236 Bacteria Bacteria 48.1 2.84e-4   NR WP_006473801.1 54396 g75841 i0 38.9 3.94117647058824 72 30 85.3 2 25 198 60 131 WP_006473801.1 carbohydrate binding domain-containing protein [endosymbiont of Riftia pachyptila] diamond 804 48.1 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Riftia pachyptila
27996794 27996794 PRJNA630162_P_NODE_148045_length_165_cov_0.896552_g146522_i0 PRJNA630162 148045 165 0.896552 1.4793108 Bathymodiolus thermophilus thioautotrophic gill symbiont 2360 Bacteria Bacteria 41.6 0.0197   NR WP_071563269.1 2360 g146522 i0 59.3 0.963636363636364 27 11 49.1 0 3 83 123 149 WP_071563269.1 signal peptidase II [Bathymodiolus thermophilus thioautotrophic gill symbiont] diamond 159 41.6 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Bathymodiolus thermophilus thioautotrophic gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;