RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_clade = "Luna-1 subcluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Luna-1 subcluster · 3 ✖

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27567220 27567220 PRJNA630162_P_NODE_109844_length_180_cov_1.229008_g108321_i0 PRJNA630162 109844 180 1.229008 2.2122144 Rhodoluna 529883 Bacteria Bacteria 113 2.97e-29   NR MBP6087339.1 1969481 g108321 i0 98.2 5.7 57 1 95 0 171 1 1 57 MBP6087339.1 imidazole glycerol phosphate synthase subunit HisF [Rhodoluna sp.] diamond 1026 113 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna sp.
30965538 30965538 PRJNA630162_P_NODE_153994_length_163_cov_2.456140_g152471_i0 PRJNA630162 153994 163 2.45614 4.0035082 Rhodoluna sp. 1969481 Bacteria Bacteria 91.7 3.35e-21   NR MBP6087730.1 1969481 g152471 i0 98.1 2.98159509202454 54 1 99.4 0 2 163 93 146 MBP6087730.1 ABC transporter substrate-binding protein [Rhodoluna sp.] diamond 486 91.7 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna sp.
31831603 31831603 PRJNA630162_P_NODE_116757_length_176_cov_1.590551_g115234_i0 PRJNA630162 116757 176 1.590551 2.79936976 Rhodoluna 529883 Bacteria Bacteria 99.4 1.7999999999999997e-24   NR MCX8529268.1 1969481 g115234 i0 91.2 2.91477272727273 57 5 97.2 0 6 176 1 57 MCX8529268.1 bacteriorhodopsin [Rhodoluna sp.] diamond 513 100 0.994 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;