RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA630162" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA630162 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27365457 27365457 PRJNA630162_P_NODE_131803_length_169_cov_0.866667_g130280_i0 PRJNA630162 131803 169 0.866667 1.46466723 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 51.2 1.36e-5   NR XP_013758294.1 461836 g130280 i0 45.9 0.656804733727811 37 20 65.7 0 125 15 620 656 XP_013758294.1 2-acylglycerol O-acyltransferase 2 [Thecamonas trahens ATCC 50062] diamond 111 51.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28028292 28028292 PRJNA630162_P_NODE_116945_length_176_cov_1.472441_g115422_i0 PRJNA630162 116945 176 1.4724410000000001 2.59149616 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 88.2 2.24e-20   NR XP_013759336.1 461836 g115422 i0 84 1.70454545454545 50 8 85.2 0 168 19 103 152 XP_013759336.1 superoxide dismutase [Thecamonas trahens ATCC 50062] diamond 300 88.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31344766 31344766 PRJNA630162_P_NODE_152496_length_164_cov_0.904348_g150973_i0 PRJNA630162 152496 164 0.904348 1.48313072 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 70.1 3.28e-13   NR XP_013757499.1 461836 g150973 i0 50 1.90243902439024 52 26 95.1 0 158 3 15 66 XP_013757499.1 cysteine and glycine-rich protein 2 [Thecamonas trahens ATCC 50062] diamond 312 70.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32861796 32861796 PRJNA630162_P_NODE_157280_length_163_cov_0.912281_g155757_i0 PRJNA630162 157280 163 0.912281 1.48701803 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 44.7 0.00269   NR XP_013758294.1 461836 g155757 i0 32.7 1.71165644171779 55 33 93.9 1 157 5 132 186 XP_013758294.1 2-acylglycerol O-acyltransferase 2 [Thecamonas trahens ATCC 50062] diamond 279 44.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;