RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA627467" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA627467 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27617810 27617810 PRJNA627467_P_NODE_21364_length_152_cov_3.650485_g21295_i0 PRJNA627467 21364 152 3.650485 5.5487372 Mustela lutreola 9666 Chordata Chordata 41.6 0.0275   NR XP_059011827.1 9666 g21295 i0 74.1 0.532894736842105 27 7 53.3 0 26 106 272 298 XP_059011827.1 UPF0602 protein C4orf47 homolog isoform X1 [Mustela lutreola] diamond 81 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela lutreola
27838540 27838540 PRJNA627467_P_NODE_13644_length_175_cov_2.753968_g13575_i0 PRJNA627467 13644 175 2.753968 4.819444 Nyctereutes procyonoides 34880 Chordata Chordata 63.5 5.99e-10   NR CAD7684924.1 34880 g13575 i0 96.6 0.497142857142857 29 1 49.7 0 134 48 239 267 CAD7684924.1 unnamed protein product [Nyctereutes procyonoides] diamond 87 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
27996697 27996697 PRJNA627467_P_NODE_12905_length_178_cov_1.542636_g12836_i0 PRJNA627467 12905 178 1.542636 2.74589208 Polypterus senegalus 55291 Chordata Chordata 43.1 0.00522   NR KAG2471189.1 55291 g12836 i0 57.1 0.589887640449438 35 15 59 0 160 56 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28059649 28059649 PRJNA627467_P_NODE_14265_length_173_cov_2.346774_g14196_i0 PRJNA627467 14265 173 2.346774 4.05991902 Callorhinus ursinus 34884 Chordata Chordata 46.2 5.64e-4   NR XP_025745449.1 34884 g14196 i0 44.1 1.02312138728324 59 25 90.2 2 162 7 127 184 XP_025745449.1 nucleolin-like isoform X1 [Callorhinus ursinus] diamond 177 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Callorhinus Callorhinus ursinus
28280547 28280547 PRJNA627467_P_NODE_16186_length_167_cov_2.262712_g16117_i0 PRJNA627467 16186 167 2.262712 3.77872904 Canis lupus familiaris 9615 Chordata Chordata 46.2 7.87e-4   NR XP_022277081.1 9615 g16117 i0 56.1 0.736526946107784 41 17 73.7 1 43 165 306 345 XP_022277081.1 protein C1orf43 homolog isoform X13 [Canis lupus familiaris] diamond 123 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
28375394 28375394 PRJNA627467_P_NODE_10606_length_185_cov_4.102941_g10537_i0 PRJNA627467 10606 185 4.102941 7.59044085 Rousettus aegyptiacus 9407 Chordata Chordata 50.8 6.98e-6   NR KAF6441178.1 9407 g10537 i0 51 0.794594594594595 49 24 79.5 0 5 151 28 76 KAF6441178.1 hypothetical protein HJG63_012328 [Rousettus aegyptiacus] diamond 147 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
28785746 28785746 PRJNA627467_P_NODE_18547_length_162_cov_3.115044_g18478_i0 PRJNA627467 18547 162 3.115044 5.04637128 Ailuropoda melanoleuca 9646 Chordata Chordata 58.9 2.3e-9   NR EFB17246.1 9646 g18478 i0 64.3 3.81481481481481 42 15 77.8 0 3 128 51 92 EFB17246.1 hypothetical protein PANDA_006643, partial [Ailuropoda melanoleuca] diamond 618 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
29146382 29146382 PRJNA627467_P_NODE_10889_length_184_cov_5.437037_g10820_i0 PRJNA627467 10889 184 5.437037 10.00414808 Squamata 8509 Chordata Chordata 46.6 7.51e-4   NR KAG8128033.1 35670 g10820 i0 52.5 4.89130434782609 40 19 65.2 0 64 183 562 601 KAG8128033.1 hypothetical protein E2320_014903 [Naja naja] diamond 900 47 0.991489361702128 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
29228199 29228199 PRJNA627467_P_NODE_14149_length_173_cov_5.177419_g14080_i0 PRJNA627467 14149 173 5.177419 8.95693487 Diceros bicornis minor 77932 Chordata Chordata 55.1 6.34e-7   NR XP_058408570.1 77932 g14080 i0 49.1 0.953757225433526 55 25 95.4 1 169 5 110 161 XP_058408570.1 uncharacterized protein LOC131412688 [Diceros bicornis minor] diamond 165 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
29448700 29448700 PRJNA627467_P_NODE_18690_length_162_cov_1.769912_g18621_i0 PRJNA627467 18690 162 1.769912 2.86725744 Anas platyrhynchos 8839 Chordata Chordata 48.9 7.85e-5   NR EOA98792.1 8839 g18621 i0 57.8 0.833333333333333 45 19 83.3 0 22 156 225 269 EOA98792.1 hypothetical protein Anapl_02947 [Anas platyrhynchos] diamond 135 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
29480230 29480230 PRJNA627467_P_NODE_6230_length_309_cov_1.784615_g6162_i0 PRJNA627467 6230 309 1.784615 5.51446035 Ailuropoda melanoleuca 9646 Chordata Chordata 42 0.0213   NR EFB17980.1 9646 g6162 i0 62.1 0.563106796116505 29 11 28.2 0 91 5 40 68 EFB17980.1 hypothetical protein PANDA_008628, partial [Ailuropoda melanoleuca] diamond 174 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
29796120 29796120 PRJNA627467_P_NODE_5291_length_316_cov_1.588015_g5223_i0 PRJNA627467 5291 316 1.588015 5.0181274 Mirounga leonina 9715 Chordata Chordata 60.1 4.57e-8   NR KAF3823747.1 9715 g5223 i0 93.3 0.284810126582278 30 2 28.5 0 305 216 90 119 KAF3823747.1 hypothetical protein GH733_007215, partial [Mirounga leonina] diamond 90 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga leonina
30585962 30585962 PRJNA627467_P_NODE_9153_length_191_cov_2.619718_g9084_i0 PRJNA627467 9153 191 2.619718 5.00366138 Molossus molossus 27622 Chordata Chordata 42 0.0229   NR KAF6462343.1 27622 g9084 i0 45.6 0.895287958115183 57 30 89.5 1 187 17 54 109 KAF6462343.1 hypothetical protein HJG59_011370 [Molossus molossus] diamond 171 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
30617619 30617619 PRJNA627467_P_NODE_19873_length_159_cov_2.454545_g19804_i0 PRJNA627467 19873 159 2.454545 3.90272655 Lynx pardinus 191816 Chordata Chordata 41.6 0.03   NR VFV17242.1 191816 g19804 i0 54 0.943396226415094 50 21 94.3 1 5 154 1 48 VFV17242.1 serine protease 42-like [Lynx pardinus] diamond 150 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Lynx Lynx pardinus
30807317 30807317 PRJNA627467_P_NODE_14474_length_172_cov_3.869919_g14405_i0 PRJNA627467 14474 172 3.869919 6.65626068 Pipistrellus kuhlii 59472 Chordata Chordata 42.7 0.00537   NR KAF6392699.1 59472 g14405 i0 51.6 2.16279069767442 31 15 54.1 0 94 2 56 86 KAF6392699.1 hypothetical protein mPipKuh1_007878 [Pipistrellus kuhlii] diamond 372 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Pipistrellus Pipistrellus kuhlii
31566217 31566217 PRJNA627467_P_NODE_18176_length_163_cov_2.043860_g18107_i0 PRJNA627467 18176 163 2.04386 3.3314918 Rhineura floridana 261503 Chordata Chordata 42.7 0.0124   NR XP_061451723.1 261503 g18107 i0 65.7 5.07975460122699 35 6 53.4 1 53 139 26 60 XP_061451723.1 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 [Rhineura floridana] diamond 828 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Rhineuridae Rhineura Rhineura floridana
32767162 32767162 PRJNA627467_P_NODE_9160_length_191_cov_2.211268_g9091_i0 PRJNA627467 9160 191 2.211268 4.22352188 Phyllostomus discolor 89673 Chordata Chordata 43.5 0.00987   NR XP_028379252.1 89673 g9091 i0 39.2 0.801047120418848 51 27 80.1 1 158 6 105 151 XP_028379252.1 ornithine carbamoyltransferase, mitochondrial [Phyllostomus discolor] diamond 153 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;