RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA624323" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA624323 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31186135 31186135 PRJNA624323_P_NODE_7615_length_257_cov_1.673913_g7453_i0 PRJNA624323 7615 257 1.673913 4.30195641 Massilistercora timonensis 2086584 Bacteria Bacteria 43.9 0.00743   NR WP_106790073.1 2086584 g7453 i0 39.2 1.19066147859922 51 31 59.5 0 247 95 31 81 WP_106790073.1 DMT family transporter [Massilistercora timonensis] diamond 306 43.9 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales   Massilistercora Massilistercora timonensis
31913866 31913866 PRJNA624323_P_NODE_9097_length_244_cov_0.900585_g8935_i0 PRJNA624323 9097 244 0.900585 2.1974274 Marinococcus halophilus 1371 Bacteria Bacteria 160 8.489999999999999e-45   NR WP_079475503.1 1371 g8935 i0 97.5 0.995901639344262 81 2 99.6 0 1 243 88 168 WP_079475503.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Marinococcus halophilus] diamond 243 160 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Marinococcus Marinococcus halophilus
32198675 32198675 PRJNA624323_P_NODE_8918_length_245_cov_0.895349_g8756_i0 PRJNA624323 8918 245 0.895349 2.19360505 Selenomonas sp. F 2053611 Bacteria Bacteria 128 8.65e-37   NR WP_009728649.1 999423 g8756 i0 91.2 0.83265306122449 68 6 83.3 0 40 243 1 68 WP_009728649.1 heavy-metal-associated domain-containing protein [Selenomonas sp. F0473] diamond 204 128 1 Bacteria   Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Selenomonas Selenomonas sp. F0473

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;