RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA624323" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA624323 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3147242 3147242 PRJNA624323_P_NODE_8403_length_248_cov_0.880000_g8241_i0 PRJNA624323 8403 248 0.88 2.1824 Mycobacterium intracellulare 1767 Bacteria Bacteria 56.2 6.6e-7   NR WP_233086100.1 1767 g8241 i0 86.7 0.362903225806452 30 4 36.3 0 91 2 3 32 WP_233086100.1 dihydrodipicolinate reductase [Mycobacterium intracellulare] diamond 90 56.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium intracellulare
3147244 3147244 PRJNA624323_P_NODE_8483_length_248_cov_0.862857_g8321_i0 PRJNA624323 8483 248 0.862857 2.13988536 Micropruina sp. 2737536 Bacteria Bacteria 154 4.38e-42   NR HMQ38092.1 2737536 g8321 i0 87.8 2.92741935483871 82 10 99.2 0 1 246 22 103 HMQ38092.1 hypothetical protein [Micropruina sp.] diamond 726 154 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Micropruina Micropruina sp.
6974826 6974826 PRJNA624323_P_NODE_8106_length_250_cov_0.870056_g7944_i0 PRJNA624323 8106 250 0.870056 2.17514 Actinomycetaceae 2049 Bacteria Bacteria 171 4e-47   NR WP_040317934.1 712888 g7944 i0 97.6 2.988 83 2 99.6 0 2 250 926 1008 WP_040317934.1 type VII secretion protein EccC [Actinobaculum sp. oral taxon 183] diamond 747 171 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinobaculum Actinobaculum sp. oral taxon 183
13350570 13350570 PRJNA624323_P_NODE_8771_length_246_cov_0.890173_g8609_i0 PRJNA624323 8771 246 0.890173 2.18982558 Propionicimonas sp. 1955623 Bacteria Bacteria 151 3.3599999999999992e-43   NR HSK34346.1 1955623 g8609 i0 92.7 1 82 6 100 0 1 246 54 135 HSK34346.1 Gfo/Idh/MocA family oxidoreductase [Propionicimonas sp.] diamond 246 151 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Propionicimonas Propionicimonas sp.
13904100 13904100 PRJNA624323_P_NODE_9391_length_242_cov_0.911243_g9229_i0 PRJNA624323 9391 242 0.911243 2.20520806 Micropruina sp. 2737536 Bacteria Bacteria 138 2.28e-37   NR WP_298133916.1 2737536 g9229 i0 81.3 4.95867768595041 80 15 99.2 0 1 240 242 321 WP_298133916.1 uroporphyrinogen decarboxylase [Micropruina sp.] diamond 1200 138 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Micropruina Micropruina sp.
26764029 26764029 PRJNA624323_P_NODE_6901_length_272_cov_0.904523_g6739_i0 PRJNA624323 6901 272 0.904523 2.46030256 Actinomycetales bacterium 1911520 Bacteria Bacteria 43.1 0.0385   NR MBU6147104.1 1911520 g6739 i0 39.4 0.783088235294118 71 40 75 1 58 261 111 181 MBU6147104.1 hypothetical protein [Actinomycetales bacterium] diamond 213 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium
28091191 28091191 PRJNA624323_P_NODE_8305_length_249_cov_0.875000_g8143_i0 PRJNA624323 8305 249 0.875 2.17875 Actinomycetales bacterium 1911520 Bacteria Bacteria 82.8 8.21e-18   NR NLI19345.1 1911520 g8143 i0 66.1 1.50602409638554 62 21 74.7 0 189 4 1 62 NLI19345.1 phosphohistidine phosphatase SixA [Actinomycetales bacterium] diamond 375 82.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium
31723981 31723981 PRJNA624323_P_NODE_8797_length_246_cov_0.884393_g8635_i0 PRJNA624323 8797 246 0.884393 2.17560678 Mycobacterium paragordonae 1389713 Bacteria Bacteria 163 4.44e-46   NR WP_133437560.1 1389713 g8635 i0 100 0.98780487804878 81 0 98.8 0 3 245 78 158 WP_133437560.1 type VII secretion protein EccB [Mycobacterium paragordonae] diamond 243 163 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paragordonae
31787147 31787147 PRJNA624323_P_NODE_7977_length_251_cov_0.865169_g7815_i0 PRJNA624323 7977 251 0.865169 2.17157419 Propionicimonas sp. 1955623 Bacteria Bacteria 135 1.19e-36   NR HQZ00074.1 1955623 g7815 i0 85.5 1.9840637450199201 83 12 99.2 0 251 3 165 247 HQZ00074.1 ABC transporter permease [Propionicimonas sp.] diamond 498 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Propionicimonas Propionicimonas sp.
31895031 31895031 PRJNA624323_P_NODE_8637_length_247_cov_0.879310_g8475_i0 PRJNA624323 8637 247 0.87931 2.1718957 Actinomycetes 1760 Bacteria Bacteria 43.1 0.0259   NR WP_175260606.1 1535768 g8475 i0 38.1 1.60323886639676 63 33 69.2 1 5 175 33 95 WP_175260606.1 type II secretion system F family protein [Streptomyces lunaelactis] diamond 396 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces lunaelactis
32072059 32072059 PRJNA624323_P_NODE_7978_length_251_cov_0.865169_g7816_i0 PRJNA624323 7978 251 0.865169 2.17157419 uncultured Quadrisphaera sp. 904978 Bacteria Bacteria 110 3.2300000000000003e-27   NR CAA9422447.1 904978 g7816 i0 69.5 0.9800796812749 82 25 98 0 1 246 135 216 CAA9422447.1 MAG: hypothetical protein AVDCRST_MAG35-2082, partial [uncultured Quadrisphaera sp.] diamond 246 110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Quadrisphaera uncultured Quadrisphaera sp.
32135499 32135499 PRJNA624323_P_NODE_7098_length_267_cov_1.587629_g6936_i0 PRJNA624323 7098 267 1.587629 4.23896943 Mycobacterium paragordonae 1389713 Bacteria Bacteria 111 6.1499999999999986e-28   NR WP_306255554.1 1389713 g6936 i0 87.9 0.651685393258427 58 7 65.2 0 1 174 201 258 WP_306255554.1 alpha/beta fold hydrolase [Mycobacterium paragordonae] diamond 174 111 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium paragordonae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;