RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA615175" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15897985 15897985 PRJNA615175_P_NODE_3233_length_864_cov_96.266751_g3091_i0 PRJNA615175 3233 864 96.266751 831.74472864 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 250 4.26e-79   NR EPB74870.1 53326 g3091 i0 48 35.7430555555556 248 128 85.8 1 85 825 5 252 EPB74870.1 ribosomal protein L30p/L7e [Ancylostoma ceylanicum] diamond 30882 251 0.99601593625498 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
28893210 28893210 PRJNA615175_P_NODE_12248_length_410_cov_1.569733_g12080_i0 PRJNA615175 12248 410 1.569733 6.4359053 Rhabditida 6236 Nematoda Nematoda 106 7.379999999999999e-24   NR VDD87253.1 51028 g12080 i0 43 3.99512195121951 135 74 96.6 1 404 9 105 239 VDD87253.1 unnamed protein product [Enterobius vermicularis] diamond 1638 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
32198410 32198410 PRJNA615175_P_NODE_1358_length_1269_cov_4.387960_g1265_i0 PRJNA615175 1358 1269 4.38796 55.6832124 Pristionchus fissidentatus 1538716 Nematoda Nematoda 84.7 2.39e-13   NR GMT30636.1 1538716 g1265 i0 32.4 0.867612293144208 182 108 42.1 5 694 161 60 230 GMT30636.1 hypothetical protein PFISCL1PPCAC_21933 [Pristionchus fissidentatus] diamond 1101 84.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;