RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA615175" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA615175 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7527606 7527606 PRJNA615175_P_NODE_2906_length_913_cov_3.854762_g2771_i0 PRJNA615175 2906 913 3.854762 35.19397706 Malacoplasma penetrans 28227 Bacteria Bacteria 63.2 2.58e-7   NR WP_129374526.1 28227 g2771 i0 33.7 0.302300109529025 92 61 30.2 0 125 400 208 299 WP_129374526.1 prolyl aminopeptidase [Malacoplasma penetrans] diamond 276 63.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans
26922133 26922133 PRJNA615175_P_NODE_18702_length_322_cov_4.493976_g18534_i0 PRJNA615175 18702 322 4.493976 14.47060272 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 102 9.21e-25   NR MCK9235995.1 1898209 g18534 i0 55.6 0.670807453416149 72 32 67.1 0 312 97 9 80 MCK9235995.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 216 102 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31154197 31154197 PRJNA615175_P_NODE_6535_length_595_cov_4.869732_g6370_i0 PRJNA615175 6535 595 4.869732 28.9749054 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 58.5 6.92e-7   NR MCK4552330.1 2231116 g6370 i0 38.3 0.867226890756303 81 48 39.8 1 272 36 73 153 MCK4552330.1 GNAT family N-acetyltransferase [Mycoplasmatota bacterium] diamond 516 58.5 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
32179920 32179920 PRJNA615175_P_NODE_11378_length_429_cov_3.261236_g11210_i0 PRJNA615175 11378 429 3.261236 13.99070244 Bacillati 1783272 Bacteria Bacteria 44.7 0.0487   NR WP_255031231.1 29562 g11210 i0 50 0.510489510489511 44 22 30.8 0 426 295 40 83 WP_255031231.1 DnaJ C-terminal domain-containing protein [Mesomycoplasma ovipneumoniae] diamond 219 44.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;