RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA615175" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8248289 8248289 PRJNA615175_P_NODE_35007_length_241_cov_2.011905_g34839_i0 PRJNA615175 35007 241 2.011905 4.84869105 Armatimonadota bacterium 2033014 Bacteria Bacteria 92 3.7300000000000006e-21   NR MBC8101624.1 2033014 g34839 i0 52.7 1.13278008298755 91 32 99.6 1 241 2 30 120 MBC8101624.1 ATP-binding protein [Armatimonadota bacterium] diamond 273 92 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28533217 28533217 PRJNA615175_P_NODE_10687_length_446_cov_4.155496_g10519_i0 PRJNA615175 10687 446 4.155496 18.53351216 Armatimonadota bacterium 2033014 Bacteria Bacteria 193 8.299999999999999e-58   NR MBI3929592.1 2033014 g10519 i0 65.3 0.988789237668161 147 51 98.9 0 6 446 68 214 MBI3929592.1 Flp pilus assembly complex ATPase component TadA [Armatimonadota bacterium] diamond 441 193 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29069974 29069974 PRJNA615175_P_NODE_19108_length_319_cov_1.247967_g18940_i0 PRJNA615175 19108 319 1.247967 3.98101473 Armatimonadota bacterium 2033014 Bacteria Bacteria 70.5 2.24e-12   NR MBC8101624.1 2033014 g18940 i0 61.9 0.592476489028213 63 22 57.4 2 318 136 114 176 MBC8101624.1 ATP-binding protein [Armatimonadota bacterium] diamond 189 70.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;