RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA615175" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26827280 26827280 PRJNA615175_P_NODE_2601_length_956_cov_4.526614_g2474_i0 PRJNA615175 2601 956 4.526614 43.27442984 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 58.2 2.4e-5   NR XP_028545909.1 77519 g2474 i0 36.7 2.18410041841004 79 42 22.9 2 916 698 233 309 XP_028545909.1 alternative splicing regulator [Plasmodium gonderi] diamond 2088 58.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
29890938 29890938 PRJNA615175_P_NODE_36211_length_213_cov_7.307143_g36043_i0 PRJNA615175 36211 213 7.307143 15.56421459 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 97.4 1.43e-24   NR KAF8821692.1 476202 g36043 i0 60 1.80281690140845 65 26 91.5 0 1 195 23 87 KAF8821692.1 ribosomal protein RPL37A, partial [Cardiosporidium cionae] diamond 384 97.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae
30080141 30080141 PRJNA615175_P_NODE_32752_length_244_cov_1.684211_g32584_i0 PRJNA615175 32752 244 1.684211 4.10947484 Sarcocystis calchasi 1344799 SAR_Eukaryotes SAR_Eukaryotes 48.5 2.77e-4   NR CAL7857720.1 1344799 g32584 i0 61.1 0.442622950819672 36 14 44.3 0 242 135 211 246 CAL7857720.1 unnamed protein product [Sarcocystis calchasi] diamond 108 48.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;