RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA615175" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26731763 26731763 PRJNA615175_P_NODE_5101_length_682_cov_2.328407_g4938_i0 PRJNA615175 5101 682 2.328407 15.87973574 Leptotrichia sp. 104608 Bacteria Bacteria 208 1.6000000000000004e-65   NR MBF1336898.1 104608 g4938 i0 94 0.510263929618768 116 7 51 0 3 350 8 123 MBF1336898.1 hypothetical protein [Leptotrichia sp.] diamond 348 208 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp.
31945089 31945089 PRJNA615175_P_NODE_22957_length_286_cov_2.103286_g22789_i0 PRJNA615175 22957 286 2.103286 6.01539796 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 167 1.61e-51   NR WP_021765817.1 712359 g22789 i0 100 0.84965034965035 81 0 85 0 1 243 25 105 WP_021765817.1 thioredoxin [Leptotrichia sp. oral taxon 215] diamond 243 167 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
32211483 32211483 PRJNA615175_P_NODE_4798_length_706_cov_3.909953_g4637_i0 PRJNA615175 4798 706 3.909953 27.60426818 Bacteria 2 Bacteria Bacteria 310 2.14e-100   NR WP_130889287.1 861 g4637 i0 61.1 10.9376770538244 234 91 99.4 0 706 5 89 322 WP_130889287.1 DHA2 family efflux MFS transporter permease subunit [Fusobacterium ulcerans] diamond 7722 313 0.990415335463259 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium ulcerans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;