RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA613025" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA613025 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27851271 27851271 PRJNA613025_S_NODE_16164_length_261_cov_1.655660_g16010_i0 PRJNA613025 16164 261 1.65566 4.3212726 Pseudomonadati 3379134 Bacteria Bacteria 87.8 6.02e-18   NR NPA10987.1 2026809 g16010 i0 63.5 3.36781609195402 63 23 72.4 0 2 190 446 508 NPA10987.1 phosphoenolpyruvate carboxykinase (ATP) [Campylobacterota bacterium] diamond 879 88.6 0.99097065462754 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
29764200 29764200 PRJNA613025_S_NODE_27311_length_178_cov_0.914729_g27157_i0 PRJNA613025 27311 178 0.914729 1.62821762 Helicobacter pylori 210 Bacteria Bacteria 56.2 5.74e-9   NR GAA9221949.1 210 g27157 i0 70 1.31460674157303 40 10 64 1 177 64 3 42 GAA9221949.1 hypothetical protein Kyoto198A_3800 [Helicobacter pylori] diamond 234 56.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30788407 30788407 PRJNA613025_S_NODE_24254_length_192_cov_2.132867_g24100_i0 PRJNA613025 24254 192 2.132867 4.09510464 Pseudomonadati 3379134 Bacteria Bacteria 64.3 2.38e-11   NR AOO65847.1 1193502 g24100 i0 59.6 1.78125 57 23 89.1 0 5 175 49 105 AOO65847.1 putative lipoprotein [Sulfurospirillum halorespirans DSM 13726] diamond 342 64.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum halorespirans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;