RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA613025" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA613025 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19718545 19718545 PRJNA613025_S_NODE_33276_length_162_cov_0.902655_g33122_i0 PRJNA613025 33276 162 0.902655 1.4623011 Candidatus Angelobacter sp. 2976921 Bacteria Bacteria 72.8 3.68e-15   NR HXT40101.1 2976921 g33122 i0 69.2 3.81481481481481 52 16 96.3 0 161 6 28 79 HXT40101.1 transaldolase family protein [Candidatus Angelobacter sp.] diamond 618 72.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia     Candidatus Angelobacter Candidatus Angelobacter sp.
26872149 26872149 PRJNA613025_S_NODE_30781_length_166_cov_0.871795_g30627_i0 PRJNA613025 30781 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 115 3.0899999999999998e-28   NR MDI9583796.1 1978231 g30627 i0 100 1.95180722891566 54 0 97.6 0 3 164 955 1008 MDI9583796.1 NEW3 domain-containing protein [Acidobacteriota bacterium] diamond 324 115 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27725500 27725500 PRJNA613025_S_NODE_32644_length_163_cov_0.894737_g32490_i0 PRJNA613025 32644 163 0.894737 1.45842131 Acidobacteriota 57723 Bacteria Bacteria 43.1 0.0093   NR HEU4521200.1 2651171 g32490 i0 36 1.85889570552147 50 32 92 0 13 162 285 334 HEU4521200.1 Calx-beta domain-containing protein [Thermoanaerobaculia bacterium] diamond 303 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28943798 28943798 PRJNA613025_S_NODE_27528_length_177_cov_1.054688_g27374_i0 PRJNA613025 27528 177 1.054688 1.86679776 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 44.3 0.00219   NR HUO35246.1 3069120 g27374 i0 37.5 0.949152542372881 56 35 94.9 0 7 174 40 95 HUO35246.1 DUF1772 domain-containing protein [Candidatus Acidiferrum sp.] diamond 168 44.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
30946553 30946553 PRJNA613025_S_NODE_25454_length_186_cov_1.467153_g25300_i0 PRJNA613025 25454 186 1.467153 2.72890458 Pseudomonadati 3379134 Bacteria Bacteria 65.5 1.05e-10   NR MEO7653584.1 2212468 g25300 i0 100 0.935483870967742 29 0 46.8 0 89 3 1 29 MEO7653584.1 AAA family ATPase [Bryobacteraceae bacterium] diamond 174 65.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31389041 31389041 PRJNA613025_S_NODE_31156_length_165_cov_1.318966_g31002_i0 PRJNA613025 31156 165 1.318966 2.1762939 Pseudomonadati 3379134 Bacteria Bacteria 113 4.38e-29   NR MEO7653584.1 2212468 g31002 i0 100 1.96363636363636 54 0 98.2 0 2 163 23 76 MEO7653584.1 AAA family ATPase [Bryobacteraceae bacterium] diamond 324 113 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;