RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA613025" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA613025 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23544401 23544401 PRJNA613025_S_NODE_29999_length_167_cov_1.296610_g29845_i0 PRJNA613025 29999 167 1.29661 2.1653387 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 111 7.79e-28   NR WP_047393833.1 1339239 g29845 i0 100 1.97604790419162 55 0 98.8 0 167 3 191 245 WP_047393833.1 DNA-directed RNA polymerase subunit alpha [Cetobacterium sp. ZOR0034] diamond 330 111 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
27553961 27553961 PRJNA613025_S_NODE_34724_length_152_cov_2.194175_g34570_i0 PRJNA613025 34724 152 2.194175 3.335146 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 82.8 1.54e-19   NR WP_294097107.1 527638 g34570 i0 93.2 0.868421052631579 44 3 86.8 0 151 20 12 55 WP_294097107.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 132 82.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
28470029 28470029 PRJNA613025_S_NODE_7226_length_516_cov_2.340471_g7074_i0 PRJNA613025 7226 516 2.340471 12.07683036 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 298 4.159999999999999e-101   NR WP_294095876.1 527638 g7074 i0 93.8 0.941860465116279 162 10 94.2 0 2 487 7 168 WP_294095876.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 486 298 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
30365047 30365047 PRJNA613025_S_NODE_25492_length_186_cov_1.116788_g25338_i0 PRJNA613025 25492 186 1.116788 2.07722568 unclassified Cetobacterium 2630983 Bacteria Bacteria 69.7 1.59e-13   NR WP_047381601.1 2630983 g25338 i0 96.7 0.983870967741935 61 2 98.4 0 2 184 30 90 WP_047381601.1 MULTISPECIES: hypothetical protein [unclassified Cetobacterium] diamond 183 69.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;