RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA613025" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJNA613025 · 18 ✖

analysis 1

  • diamond · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20994160 20994160 PRJNA613025_S_NODE_28117_length_174_cov_1.816000_g27963_i0 PRJNA613025 28117 174 1.816 3.15984 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 6.03e-26   NR XP_004334335.1 1257118 g27963 i0 78.9 7.94827586206897 57 12 98.3 0 2 172 111 167 XP_004334335.1 actin related protein 2/3 complex, 41 kDa subunit [Acanthamoeba castellanii str. Neff] diamond 1383 107 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22268800 22268800 PRJNA613025_S_NODE_17098_length_249_cov_2.040000_g16944_i0 PRJNA613025 17098 249 2.04 5.0796 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 122 3.49e-33   NR XP_004368153.1 1257118 g16944 i0 75 2.62650602409639 72 18 86.7 0 1 216 90 161 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 654 122 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24817730 24817730 PRJNA613025_S_NODE_10340_length_383_cov_4.182635_g10187_i0 PRJNA613025 10340 383 4.182635 16.01949205 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 132 5.42e-37   NR 1PRQ_A 5755 g10187 i0 62.6 1.67624020887728 107 39 83.8 1 376 56 20 125 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 642 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24817865 24817865 PRJNA613025_S_NODE_15600_length_270_cov_1.375566_g15446_i0 PRJNA613025 15600 270 1.375566 3.7140282 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 6.39e-16   NR XP_004338635.1 1257118 g15446 i0 58.9 3.01111111111111 73 29 81.1 1 264 46 82 153 XP_004338635.1 60S ribosomal protein L36, putative [Acanthamoeba castellanii str. Neff] diamond 813 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27016941 27016941 PRJNA613025_S_NODE_10202_length_388_cov_2.407080_g10049_i0 PRJNA613025 10202 388 2.40708 9.3394704 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 164 2.69e-49   NR 7SOG_A 5755 g10049 i0 63.9 0.920103092783505 119 43 92 0 8 364 17 135 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 357 164 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27143100 27143100 PRJNA613025_S_NODE_26262_length_182_cov_1.533835_g26108_i0 PRJNA613025 26262 182 1.533835 2.7915797 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 84.3 4.55e-19   NR XP_004333102.1 1257118 g26108 i0 80.8 1.71428571428571 52 10 85.7 0 178 23 81 132 XP_004333102.1 ribosomal protein L32, putative [Acanthamoeba castellanii str. Neff] diamond 312 84.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27649045 27649045 PRJNA613025_S_NODE_24884_length_189_cov_1.092857_g24730_i0 PRJNA613025 24884 189 1.092857 2.06549973 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.4 1.54e-19   NR XP_004356664.1 1257118 g24730 i0 72.9 1.52380952380952 48 13 76.2 0 1 144 151 198 XP_004356664.1 rho guanine dissociation factor isoform 2, putative [Acanthamoeba castellanii str. Neff] diamond 288 87.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28185473 28185473 PRJNA613025_S_NODE_31586_length_165_cov_0.862069_g31432_i0 PRJNA613025 31586 165 0.862069 1.42241385 Heterostelium album PN5 2086695 Evosea other_Eukaryota 67 3.41e-11   NR XP_020431823.1 670386 g31432 i0 50.9 1.92727272727273 53 26 96.4 0 3 161 88 140 XP_020431823.1 glutathione S-transferase domain-containing protein [Heterostelium album PN500] diamond 318 67 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
28943792 28943792 PRJNA613025_S_NODE_16108_length_262_cov_1.375587_g15954_i0 PRJNA613025 16108 262 1.375587 3.60403794 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 92.8 9.07e-20   NR XP_647081.2 352472 g15954 i0 51.9 2.81679389312977 81 39 92.7 0 245 3 73 153 XP_647081.2 p21-activated protein kinase [Dictyostelium discoideum AX4] diamond 738 92.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29587671 29587671 PRJNA613025_S_NODE_8230_length_465_cov_3.689904_g8078_i0 PRJNA613025 8230 465 3.689904 17.1580536 Eumycetozoa 142796 Evosea other_Eukaryota 141 8.77e-40   NR KYR02504.1 361077 g8078 i0 50.7 2.6 134 66 86.5 0 463 62 7 140 KYR02504.1 actin binding protein [Tieghemostelium lacteum] diamond 1209 141 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29606154 29606154 PRJNA613025_S_NODE_27050_length_179_cov_1.000000_g26896_i0 PRJNA613025 27050 179 1 1.79 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 47 1.86e-4   NR XP_012758105.1 1410327 g26896 i0 35.7 0.93854748603352 56 36 93.9 0 172 5 22 77 XP_012758105.1 hypothetical protein SAMD00019534_020600, partial [Acytostelium subglobosum LB1] diamond 168 47 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
31072844 31072844 PRJNA613025_S_NODE_19775_length_222_cov_1.161850_g19621_i0 PRJNA613025 19775 222 1.16185 2.579307 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67 7.79e-11   NR XP_004182963.1 370355 g19621 i0 44.6 2.01351351351351 74 38 97.3 2 218 3 772 844 XP_004182963.1 Gelation factor, putative [Entamoeba invadens IP1] diamond 447 67.4 0.99406528189911 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
31280924 31280924 PRJNA613025_S_NODE_25375_length_186_cov_2.379562_g25221_i0 PRJNA613025 25375 186 2.379562 4.42598532 Polysphondylium violaceum 133409 Evosea other_Eukaryota 54.7 9.99e-7   NR KAF2073311.1 133409 g25221 i0 49.2 1.96774193548387 61 31 98.4 0 3 185 198 258 KAF2073311.1 hypothetical protein CYY_005364 [Polysphondylium violaceum] diamond 366 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31660348 31660348 PRJNA613025_S_NODE_18777_length_231_cov_1.390110_g18623_i0 PRJNA613025 18777 231 1.39011 3.2111541 Heterostelium album PN5 2086695 Evosea other_Eukaryota 90.1 6.4e-20   NR XP_020433716.1 670386 g18623 i0 54.8 0.948051948051948 73 30 94.8 1 3 221 56 125 XP_020433716.1 component of the counting factor complex [Heterostelium album PN500] diamond 219 90.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31818600 31818600 PRJNA613025_S_NODE_19117_length_228_cov_0.849162_g18963_i0 PRJNA613025 19117 228 0.849162 1.93608936 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 92 1.11e-21   NR XP_012752219.1 1410327 g18963 i0 56.9 0.947368421052632 72 31 94.7 0 5 220 48 119 XP_012752219.1 hypothetical protein SAMD00019534_077250 [Acytostelium subglobosum LB1] diamond 216 92 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
31976823 31976823 PRJNA613025_S_NODE_20078_length_219_cov_1.647059_g19924_i0 PRJNA613025 20078 219 1.647059 3.60705921 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 111 6.270000000000001e-27   NR XP_004333651.1 1257118 g19924 i0 64.4 1 73 26 100 0 219 1 50 122 XP_004333651.1 coronin3, putative [Acanthamoeba castellanii str. Neff] diamond 219 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32261959 32261959 PRJNA613025_S_NODE_29678_length_168_cov_1.705882_g29524_i0 PRJNA613025 29678 168 1.705882 2.86588176 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 62.8 1.19e-9   NR KYR00721.1 361077 g29524 i0 55.8 0.928571428571429 52 23 92.9 0 1 156 1189 1240 KYR00721.1 alpha actinin [Tieghemostelium lacteum] diamond 156 62.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32325272 32325272 PRJNA613025_S_NODE_32779_length_163_cov_0.885965_g32625_i0 PRJNA613025 32779 163 0.885965 1.44412295 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 46.6 5.63e-4   NR XP_004254922.1 370355 g32625 i0 48.8 0.754601226993865 41 20 75.5 1 133 11 1193 1232 XP_004254922.1 serine-threonine protein kinase, putative [Entamoeba invadens IP1] diamond 123 46.6 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;