RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA611476" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA611476 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9517806 9517806 PRJNA611476_P_NODE_42728_length_328_cov_1.862745_g41937_i0 PRJNA611476 42728 328 1.862745 6.1098036 Rhodocaloribacter 2893090 Bacteria Bacteria 171 4.73e-49   NR GIV60060.1 2026787 g41937 i0 72.5 2.99085365853659 109 30 99.7 0 328 2 41 149 GIV60060.1 MAG: hypothetical protein KatS3mg043_1149 [Rhodothermaceae bacterium] diamond 981 171 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
24816357 24816357 PRJNA611476_P_NODE_860_length_2211_cov_5.091674_g518_i0 PRJNA611476 860 2211 5.091674 112.57691214 Rhodothermus marinus 29549 Bacteria Bacteria 749 4.3399999999999994e-263   NR WP_012843110.1 29549 g518 i0 63.8 5.03120759837178 618 217 83.9 5 34 1887 1 611 WP_012843110.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Rhodothermus marinus] diamond 11124 749 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
28185389 28185389 PRJNA611476_P_NODE_56026_length_292_cov_2.082192_g55235_i0 PRJNA611476 56026 292 2.082192 6.08000064 Rhodothermales bacterium 2306054 Bacteria Bacteria 59.7 4.59e-8   NR MBE2186445.1 2306054 g55235 i0 59.3 0.554794520547945 54 22 55.5 0 269 108 69 122 MBE2186445.1 PhzF family phenazine biosynthesis protein [Rhodothermales bacterium] diamond 162 59.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;