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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA610520" and tax_superkingdom = "Bacteria"

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tax_kingdom 2

tax_superkingdom 1

  • Bacteria · 30 ✖

bioproject 1

  • PRJNA610520 · 30 ✖

analysis 1

  • diamond · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
588391 588391 PRJNA610520_S_NODE_30881_length_320_cov_2.238866_g30791_i0 PRJNA610520 30881 320 2.238866 7.1643712 Nannocystaceae bacterium 2545255 Bacteria Bacteria 103 5.51e-23   NR MEZ4453972.1 2545255 g30791 i0 61.1 2.71875 72 28 67.5 0 53 268 632 703 MEZ4453972.1 M13 family metallopeptidase [Nannocystaceae bacterium] diamond 870 103 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
6251160 6251160 PRJNA610520_S_NODE_37965_length_300_cov_3.361233_g37875_i0 PRJNA610520 37965 300 3.361233 10.083699 Bacteria 2 Bacteria Bacteria 119 2.21e-30   NR MBX9836689.1 2654442 g37875 i0 62.1 2.61 87 33 87 0 6 266 193 279 MBX9836689.1 S-methyl-5-thioribose-1-phosphate isomerase [Silvanigrellaceae bacterium] diamond 783 120 0.991666666666667 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
16450160 16450160 PRJNA610520_S_NODE_64653_length_246_cov_3.115607_g64563_i0 PRJNA610520 64653 246 3.115607 7.66439322 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 98.6 2.22e-22   NR MBS5129901.1 1898203 g64563 i0 62 0.963414634146341 79 29 96.3 1 1 237 271 348 MBS5129901.1 hypothetical protein [Lachnospiraceae bacterium] diamond 237 98.6 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
22824756 22824756 PRJNA610520_S_NODE_26678_length_334_cov_1.475096_g26588_i0 PRJNA610520 26678 334 1.475096 4.92682064 Bacteroidota bacterium 1898104 Bacteria Bacteria 68.2 1.27e-11   NR MCE3279722.1 1898104 g26588 i0 39.8 0.745508982035928 83 42 67.4 1 330 106 75 157 MCE3279722.1 ribosomal protein [Bacteroidota bacterium] diamond 249 68.2 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
26605113 26605113 PRJNA610520_S_NODE_70221_length_236_cov_2.834356_g70131_i0 PRJNA610520 70221 236 2.834356 6.68908016 Pleionea sediminis 2569479 Bacteria Bacteria 64.3 5.05e-10   NR WP_144392370.1 2569479 g70131 i0 41.6 2.9364406779661 77 45 97.9 0 6 236 23 99 WP_144392370.1 TatD family hydrolase [Pleionea sediminis] diamond 693 64.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Pleioneaceae Pleionea Pleionea sediminis
26921962 26921962 PRJNA610520_S_NODE_22622_length_349_cov_1.094203_g22532_i0 PRJNA610520 22622 349 1.094203 3.81876847 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 113 3.18e-28   NR MBP5215296.1 1913988 g22532 i0 60 3.30085959885387 100 39 86 1 347 48 150 248 MBP5215296.1 chaperonin GroEL [Alphaproteobacteria bacterium] diamond 1152 113 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
27016820 27016820 PRJNA610520_S_NODE_20402_length_358_cov_1.080702_g20312_i0 PRJNA610520 20402 358 1.080702 3.86891316 Synechococcaceae cyanobacterium SM2_3_1 2720469 Bacteria Bacteria 42 0.0477   NR NJK63862.1 2720469 g20312 i0 38.9 0.452513966480447 54 22 36 2 342 214 18 71 NJK63862.1 hypothetical protein [Synechococcaceae cyanobacterium SM2_3_1] diamond 162 42 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae   Synechococcaceae cyanobacterium SM2_3_1
27819969 27819969 PRJNA610520_S_NODE_52504_length_267_cov_1.865979_g52414_i0 PRJNA610520 52504 267 1.865979 4.98216393 Bacteroidota 976 Bacteria Bacteria 44.3 0.0132   NR HYF29897.1 1869212 g52414 i0 60.7 1.25842696629213 28 11 31.5 0 263 180 299 326 HYF29897.1 ADP-glyceromanno-heptose 6-epimerase [Chitinophagaceae bacterium] diamond 336 44.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
27838081 27838081 PRJNA610520_S_NODE_47564_length_277_cov_2.882353_g47474_i0 PRJNA610520 47564 277 2.882353 7.98411781 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 61.2 1.49e-8   NR MCH9845700.1 1913988 g47474 i0 44.6 0.703971119133574 65 36 70.4 0 4 198 89 153 MCH9845700.1 thioredoxin [Alphaproteobacteria bacterium] diamond 195 61.2 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
27996221 27996221 PRJNA610520_S_NODE_42865_length_288_cov_1.702326_g42775_i0 PRJNA610520 42865 288 1.702326 4.90269888 Flavobacterium sp. 239 Bacteria Bacteria 175 5.309999999999999e-54   NR HEY4628803.1 239 g42775 i0 93.8 1 96 6 100 0 288 1 60 155 HEY4628803.1 RNA polymerase sigma factor [Flavobacterium sp.] diamond 288 175 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
28059195 28059195 PRJNA610520_S_NODE_43145_length_287_cov_2.766355_g43055_i0 PRJNA610520 43145 287 2.766355 7.93943885 Helcococcus kunzii 40091 Bacteria Bacteria 141 2.71e-40   NR WP_005398460.1 40091 g43055 i0 71.6 0.993031358885017 95 27 99.3 0 286 2 92 186 WP_005398460.1 DUF3783 domain-containing protein [Helcococcus kunzii] diamond 285 141 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Helcococcus Helcococcus kunzii
28059197 28059197 PRJNA610520_S_NODE_65925_length_245_cov_0.895349_g65835_i0 PRJNA610520 65925 245 0.895349 2.19360505 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 47 4.71e-4   NR WP_395515008.1 251699 g65835 i0 42.1 1.82448979591837 76 42 90.6 1 21 242 48 123 WP_395515008.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 447 47 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
28103799 28103799 PRJNA610520_S_NODE_54825_length_262_cov_9.142857_g54735_i0 PRJNA610520 54825 262 9.142857 23.95428534 root 1 Root_unresolved Root_unresolved 41.6 0.0185   NR WP_143213185.1 470 g54735 i0 100 87.9389312977099 20 0 22.9 0 262 203 55 74 WP_143213185.1 hypothetical protein, partial [Acinetobacter baumannii] diamond 23040 41.6 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
28501399 28501399 PRJNA610520_S_NODE_50847_length_270_cov_3.208122_g50757_i0 PRJNA610520 50847 270 3.208122 8.6619294 bacterium 1869227 Bacteria Bacteria 54.3 3.09e-7   NR MDA8882810.1 1869227 g50757 i0 36.5 0.822222222222222 74 43 77.8 1 1 210 16 89 MDA8882810.1 GIY-YIG nuclease family protein [bacterium] diamond 222 54.3 1 Bacteria               bacterium
28546267 28546267 PRJNA610520_S_NODE_55927_length_260_cov_2.679144_g55837_i0 PRJNA610520 55927 260 2.679144 6.9657744 root 1 Root_unresolved Root_unresolved 50.4 1.65e-5   NR WP_337580933.1 454154 g55837 i0 52.8 4.21153846153846 53 20 61.2 1 258 100 67 114 WP_337580933.1 ubiquitin-like protein [Paraprevotella clara] diamond 1095 50.8 0.992125984251969 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara
29101289 29101289 PRJNA610520_S_NODE_49028_length_274_cov_2.223881_g48938_i0 PRJNA610520 49028 274 2.223881 6.09343394 Phycisphaerales bacterium 2052180 Bacteria Bacteria 72.8 6.23e-13   NR MCC6971375.1 2052180 g48938 i0 51.2 2.78102189781022 84 36 92 2 7 258 196 274 MCC6971375.1 SPFH domain-containing protein [Phycisphaerales bacterium] diamond 762 72.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
29227739 29227739 PRJNA610520_S_NODE_35709_length_306_cov_3.042918_g35619_i0 PRJNA610520 35709 306 3.042918 9.31132908 Clostridia 186801 Bacteria Bacteria 128 7.43e-34   NR WP_117752361.1 186801 g35619 i0 100 0.647058823529412 66 0 64.7 0 200 3 1 66 WP_117752361.1 MULTISPECIES: hypothetical protein [Clostridia] diamond 198 128 1 Bacteria   Bacillati Bacillota Clostridia        
29385489 29385489 PRJNA610520_S_NODE_56649_length_259_cov_1.629032_g56559_i0 PRJNA610520 56649 259 1.629032 4.21919288 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 77 1.7e-15   NR HEV2150017.1 3047548 g56559 i0 45.2 1.92277992277992 84 46 97.3 0 8 259 61 144 HEV2150017.1 thioesterase family protein [Longimicrobiaceae bacterium] diamond 498 77 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29795679 29795679 PRJNA610520_S_NODE_43511_length_286_cov_3.530516_g43421_i0 PRJNA610520 43511 286 3.530516 10.09727576 Flavimarina sp. Hel_I_48 1392488 Bacteria Bacteria 65.1 4.85e-10   NR WP_031426029.1 1392488 g43421 i0 50.8 2.13986013986014 65 31 68.2 1 35 229 187 250 WP_031426029.1 DNA/RNA non-specific endonuclease [Flavimarina sp. Hel_I_48] diamond 612 65.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavimarina Flavimarina sp. Hel_I_48
29858930 29858930 PRJNA610520_S_NODE_18671_length_365_cov_9.058219_g18581_i0 PRJNA610520 18671 365 9.058219 33.06249935 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 49.3 6.54e-4   NR HCO12561.1 2026742 g18581 i0 35.5 0.624657534246575 76 47 62.5 1 358 131 40 113 HCO12561.1 hypothetical protein [Gemmatimonadota bacterium] diamond 228 49.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30048375 30048375 PRJNA610520_S_NODE_51451_length_269_cov_2.061224_g51361_i0 PRJNA610520 51451 269 2.061224 5.54469256 Mediterraneibacter gnavus 33038 Bacteria Bacteria 151 1.62e-44   NR MFQ7526563.1 33038 g51361 i0 88.5 1.94052044609665 87 10 97 0 268 8 83 169 MFQ7526563.1 AAA family ATPase [Mediterraneibacter gnavus] diamond 522 151 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus
30933295 30933295 PRJNA610520_S_NODE_20654_length_356_cov_7.526502_g20564_i0 PRJNA610520 20654 356 7.526502 26.79434712 Crocinitomix catalasitica 184607 Bacteria Bacteria 48.5 0.00113   NR WP_035844478.1 184607 g20564 i0 35.2 0.76685393258427 91 55 74.2 2 345 82 91 180 WP_035844478.1 trypsin-like peptidase domain-containing protein [Crocinitomix catalasitica] diamond 273 48.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Crocinitomix Crocinitomix catalasitica
31091216 31091216 PRJNA610520_S_NODE_64215_length_247_cov_1.327586_g64125_i0 PRJNA610520 64215 247 1.327586 3.27913742 Paenisporosarcina macmurdoensis 212659 Bacteria Bacteria 165 8.59e-50   NR WP_377733470.1 212659 g64125 i0 100 0.995951417004049 82 0 99.6 0 246 1 80 161 WP_377733470.1 cyclase family protein [Paenisporosarcina macmurdoensis] diamond 246 165 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Caryophanaceae Paenisporosarcina Paenisporosarcina macmurdoensis
31217190 31217190 PRJNA610520_S_NODE_60195_length_252_cov_2.553073_g60105_i0 PRJNA610520 60195 252 2.553073 6.43374396 Gammaproteobacteria bacterium 1913989 Bacteria Bacteria 47.8 6.78e-4   NR RMH17565.1 1913989 g60105 i0 35.7 0.666666666666667 56 36 66.7 0 30 197 336 391 RMH17565.1 MAG: DUF4124 domain-containing protein [Gammaproteobacteria bacterium] diamond 168 47.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium
31502467 31502467 PRJNA610520_S_NODE_70356_length_235_cov_3.839506_g70266_i0 PRJNA610520 70356 235 3.839506 9.0228391 Streptomyces niveus 193462 Bacteria Bacteria 65.9 2.42e-10   NR WP_255285735.1 193462 g70266 i0 65.2 2.31063829787234 46 16 58.7 0 234 97 642 687 WP_255285735.1 neutral/alkaline ceramidase, partial [Streptomyces niveus] diamond 543 65.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces niveus
31534078 31534078 PRJNA610520_S_NODE_50516_length_271_cov_1.838384_g50426_i0 PRJNA610520 50516 271 1.838384 4.98202064 bacterium 1869227 Bacteria Bacteria 42 0.0196   NR MDA8882810.1 1869227 g50426 i0 37.1 0.686346863468635 62 38 67.5 1 8 190 28 89 MDA8882810.1 GIY-YIG nuclease family protein [bacterium] diamond 186 42 1 Bacteria               bacterium
31673425 31673425 PRJNA610520_S_NODE_22617_length_349_cov_1.126812_g22527_i0 PRJNA610520 22617 349 1.126812 3.93257388 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.00756   NR MCI0602785.1 1869227 g22527 i0 37 6.10315186246418 54 31 46.4 1 1 162 696 746 MCI0602785.1 M28 family peptidase [bacterium] diamond 2130 46.6 0.991416309012876 Bacteria               bacterium
31723588 31723588 PRJNA610520_S_NODE_61937_length_250_cov_1.056497_g61847_i0 PRJNA610520 61937 250 1.056497 2.6412425 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 42.7 0.0325   NR WP_395569333.1 251699 g61847 i0 44.4 0.756 63 16 74.4 3 54 239 153 197 WP_395569333.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 189 42.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
31755233 31755233 PRJNA610520_S_NODE_32817_length_314_cov_4.282158_g32727_i0 PRJNA610520 32817 314 4.282158 13.44597612 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 45.8 0.00657   NR HEX9126186.1 2072417 g32727 i0 35.6 0.697452229299363 73 39 62.1 1 30 224 17 89 HEX9126186.1 glycosyltransferase family 4 protein [Candidatus Methylomirabilota bacterium] diamond 219 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
32040064 32040064 PRJNA610520_S_NODE_39118_length_297_cov_3.392857_g39028_i0 PRJNA610520 39118 297 3.392857 10.07678529 Nannocystis exedens 54 Bacteria Bacteria 62.4 6.87e-9   NR WP_096325640.1 54 g39028 i0 66.7 0.424242424242424 42 14 42.4 0 55 180 262 303 WP_096325640.1 hypothetical protein [Nannocystis exedens] diamond 126 62.4 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;