contig_metadata
7 rows where analysis = "diamond", bioproject = "PRJNA610520" and tax_phylum = "Pseudomonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26605113 | 26605113 | PRJNA610520_S_NODE_70221_length_236_cov_2.834356_g70131_i0 | PRJNA610520 | 70221 | 236 | 2.834356 | 6.68908016 | Pleionea sediminis | 2569479 | Bacteria | Bacteria | 64.3 | 5.05e-10 | NR | WP_144392370.1 | 2569479 | g70131 | i0 | 41.6 | 2.9364406779661 | 77 | 45 | 97.9 | 0 | 6 | 236 | 23 | 99 | WP_144392370.1 TatD family hydrolase [Pleionea sediminis] | diamond | 693 | 64.3 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Oceanospirillales | Pleioneaceae | Pleionea | Pleionea sediminis | ||
| 26921962 | 26921962 | PRJNA610520_S_NODE_22622_length_349_cov_1.094203_g22532_i0 | PRJNA610520 | 22622 | 349 | 1.094203 | 3.81876847 | Alphaproteobacteria bacterium | 1913988 | Bacteria | Bacteria | 113 | 3.18e-28 | NR | MBP5215296.1 | 1913988 | g22532 | i0 | 60 | 3.30085959885387 | 100 | 39 | 86 | 1 | 347 | 48 | 150 | 248 | MBP5215296.1 chaperonin GroEL [Alphaproteobacteria bacterium] | diamond | 1152 | 113 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Alphaproteobacteria bacterium | |||||
| 27838081 | 27838081 | PRJNA610520_S_NODE_47564_length_277_cov_2.882353_g47474_i0 | PRJNA610520 | 47564 | 277 | 2.882353 | 7.98411781 | Alphaproteobacteria bacterium | 1913988 | Bacteria | Bacteria | 61.2 | 1.49e-8 | NR | MCH9845700.1 | 1913988 | g47474 | i0 | 44.6 | 0.703971119133574 | 65 | 36 | 70.4 | 0 | 4 | 198 | 89 | 153 | MCH9845700.1 thioredoxin [Alphaproteobacteria bacterium] | diamond | 195 | 61.2 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Alphaproteobacteria bacterium | |||||
| 28059197 | 28059197 | PRJNA610520_S_NODE_65925_length_245_cov_0.895349_g65835_i0 | PRJNA610520 | 65925 | 245 | 0.895349 | 2.19360505 | Pseudomonas syringae group genomosp. 7 | 251699 | Bacteria | Bacteria | 47 | 4.71e-4 | NR | WP_395515008.1 | 251699 | g65835 | i0 | 42.1 | 1.82448979591837 | 76 | 42 | 90.6 | 1 | 21 | 242 | 48 | 123 | WP_395515008.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] | diamond | 447 | 47 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas syringae group genomosp. 7 | ||
| 28103799 | 28103799 | PRJNA610520_S_NODE_54825_length_262_cov_9.142857_g54735_i0 | PRJNA610520 | 54825 | 262 | 9.142857 | 23.95428534 | root | 1 | Root_unresolved | Root_unresolved | 41.6 | 0.0185 | NR | WP_143213185.1 | 470 | g54735 | i0 | 100 | 87.9389312977099 | 20 | 0 | 22.9 | 0 | 262 | 203 | 55 | 74 | WP_143213185.1 hypothetical protein, partial [Acinetobacter baumannii] | diamond | 23040 | 41.6 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Acinetobacter baumannii | ||
| 31217190 | 31217190 | PRJNA610520_S_NODE_60195_length_252_cov_2.553073_g60105_i0 | PRJNA610520 | 60195 | 252 | 2.553073 | 6.43374396 | Gammaproteobacteria bacterium | 1913989 | Bacteria | Bacteria | 47.8 | 6.78e-4 | NR | RMH17565.1 | 1913989 | g60105 | i0 | 35.7 | 0.666666666666667 | 56 | 36 | 66.7 | 0 | 30 | 197 | 336 | 391 | RMH17565.1 MAG: DUF4124 domain-containing protein [Gammaproteobacteria bacterium] | diamond | 168 | 47.8 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Gammaproteobacteria bacterium | |||||
| 31723588 | 31723588 | PRJNA610520_S_NODE_61937_length_250_cov_1.056497_g61847_i0 | PRJNA610520 | 61937 | 250 | 1.056497 | 2.6412425 | Pseudomonas syringae group genomosp. 7 | 251699 | Bacteria | Bacteria | 42.7 | 0.0325 | NR | WP_395569333.1 | 251699 | g61847 | i0 | 44.4 | 0.756 | 63 | 16 | 74.4 | 3 | 54 | 239 | 153 | 197 | WP_395569333.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] | diamond | 189 | 42.7 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas syringae group genomosp. 7 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;