RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA610520" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA610520 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13342439 13342439 PRJNA610520_S_NODE_27831_length_330_cov_1.653696_g27741_i0 PRJNA610520 27831 330 1.653696 5.4571968 Zopfochytrium polystomum 2211651 Fungi Fungi 72.4 3.64e-12   NR KAI9325979.1 2211651 g27741 i0 48.8 0.745454545454545 82 42 74.5 0 2 247 352 433 KAI9325979.1 dehydrogenase E1 component-domain-containing protein [Zopfochytrium polystomum] diamond 246 72.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Zopfochytrium Zopfochytrium polystomum
24814636 24814636 PRJNA610520_S_NODE_23160_length_346_cov_9.029304_g23070_i0 PRJNA610520 23160 346 9.029304 31.24139184 Polychytrium aggregatum 110093 Fungi Fungi 152 6.52e-45   NR XP_052968709.1 110093 g23070 i0 76.5 2.53179190751445 98 23 85 0 345 52 13 110 XP_052968709.1 ribosomal protein L34e-domain-containing protein [Polychytrium aggregatum] diamond 876 152 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
27806904 27806904 PRJNA610520_S_NODE_21204_length_354_cov_3.523132_g21114_i0 PRJNA610520 21204 354 3.523132 12.47188728 Spizellomyces punctatus DAOM BR117 645134 Fungi Fungi 63.9 1.45e-9   NR XP_016606696.1 645134 g21114 i0 47.3 3.77118644067797 55 29 46.6 0 4 168 129 183 XP_016606696.1 uncharacterized protein SPPG_06338 [Spizellomyces punctatus DAOM BR117] diamond 1335 63.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
28154212 28154212 PRJNA610520_S_NODE_28005_length_329_cov_3.914062_g27915_i0 PRJNA610520 28005 329 3.914062 12.87726398 Anaeromyces robustus 1754192 Fungi Fungi 119 2.33e-31   NR ORX78915.1 1754192 g27915 i0 64.4 0.793313069908815 87 31 79.3 0 319 59 100 186 ORX78915.1 TRAPP I complex [Anaeromyces robustus] diamond 261 119 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Anaeromyces Anaeromyces robustus
30111663 30111663 PRJNA610520_S_NODE_15472_length_381_cov_12.772727_g15382_i0 PRJNA610520 15472 381 12.772727 48.66408987 Entophlyctis helioformis 281842 Fungi Fungi 111 1.85e-26   NR KAI8927458.1 281842 g15382 i0 51 5.49606299212598 104 51 81.9 0 380 69 242 345 KAI8927458.1 carbohydrate kinase PfkB [Entophlyctis helioformis] diamond 2094 111 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis helioformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;