RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA610520" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA610520 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17725331 17725331 PRJNA610520_S_NODE_24854_length_340_cov_3.310861_g24764_i0 PRJNA610520 24854 340 3.310861 11.2569274 Opisthokonta 33154 Chordata Chordata 140 1.2899999999999999e-39   NR XP_032802933.1 7757 g24764 i0 65.3 6.10588235294118 101 35 89.1 0 340 38 66 166 XP_032802933.1 RNA-binding protein 8A [Petromyzon marinus] diamond 2076 140 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
29448266 29448266 PRJNA610520_S_NODE_34330_length_310_cov_2.274262_g34240_i0 PRJNA610520 34330 310 2.274262 7.0502122 Ciona intestinalis 7719 Chordata Chordata 68.6 6.68e-11   NR XP_002124569.1 7719 g34240 i0 67.4 1.30645161290323 46 15 44.5 0 292 155 388 433 XP_002124569.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [Ciona intestinalis] diamond 405 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
30301790 30301790 PRJNA610520_S_NODE_57732_length_257_cov_1.255435_g57642_i0 PRJNA610520 57732 257 1.255435 3.22646795 Psammomys obesus 48139 Chordata Chordata 46.6 0.0018600000000000001   NR XP_055471089.1 48139 g57642 i0 56.8 0.431906614785992 37 16 43.2 0 167 57 331 367 XP_055471089.1 solute carrier family 35 member E2B isoform X2 [Psammomys obesus] diamond 111 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Psammomys Psammomys obesus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;