RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA609258" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA609258 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27585682 27585682 PRJNA609258_P_NODE_46704_length_263_cov_1.205263_g46319_i0 PRJNA609258 46704 263 1.205263 3.16984169 Parvimonas sp. M13 3110694 Bacteria Bacteria 50.1 9.25e-5   NR WP_324000474.1 3110694 g46319 i0 42.3 0.809885931558935 71 40 81 1 214 2 7 76 WP_324000474.1 interleukin-like EMT inducer domain-containing protein, partial [Parvimonas sp. M13] diamond 213 50.1 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas Parvimonas sp. M13
29132931 29132931 PRJNA609258_P_NODE_45629_length_267_cov_1.474227_g45244_i0 PRJNA609258 45629 267 1.474227 3.93618609 uncultured Granulicatella sp. 316089 Bacteria Bacteria 80.1 8.54e-18   NR WP_314076697.1 316089 g45244 i0 84.2 0.426966292134831 38 6 42.7 0 7 120 17 54 WP_314076697.1 hypothetical protein [uncultured Granulicatella sp.] diamond 114 80.1 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Granulicatella uncultured Granulicatella sp.
29606015 29606015 PRJNA609258_P_NODE_36570_length_305_cov_15.008621_g36185_i0 PRJNA609258 36570 305 15.008621 45.77629405 Veillonella sp. 1926307 Bacteria Bacteria 159 2.3899999999999994e-48   NR WP_366512514.1 1926307 g36185 i0 73.3 1.97704918032787 101 27 99.3 0 305 3 3 103 WP_366512514.1 hypothetical protein [Veillonella sp.] diamond 603 159 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella sp.
30017079 30017079 PRJNA609258_P_NODE_48951_length_254_cov_1.292818_g48566_i0 PRJNA609258 48951 254 1.292818 3.28375772 Erysipelotrichaceae bacterium 2049044 Bacteria Bacteria 78.2 1.43e-14   NR KAF0227013.1 2049044 g48566 i0 48.8 20.6811023622047 82 41 95.7 1 249 7 278 359 KAF0227013.1 MAG: ATP-dependent Clp protease ATP-binding subunit [Erysipelotrichaceae bacterium] diamond 5253 78.2 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae   Erysipelotrichaceae bacterium
30048370 30048370 PRJNA609258_P_NODE_50511_length_252_cov_0.871508_g50126_i0 PRJNA609258 50511 252 0.871508 2.19620016 Gracilibacillus sp. YIM 98692 2663532 Bacteria Bacteria 41.2 0.0233   NR WP_346427626.1 2663532 g50126 i0 42.6 0.642857142857143 54 29 64.3 1 228 67 18 69 WP_346427626.1 hypothetical protein [Gracilibacillus sp. YIM 98692] diamond 162 41.2 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Gracilibacillus Gracilibacillus sp. YIM 98692
30333376 30333376 PRJNA609258_P_NODE_57512_length_245_cov_0.906977_g57127_i0 PRJNA609258 57512 245 0.906977 2.22209365 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 42.4 0.0465   NR MCR4779334.1 1898203 g57127 i0 35 0.73469387755102 60 36 73.5 1 219 40 125 181 MCR4779334.1 6-phospho-beta-glucosidase [Lachnospiraceae bacterium] diamond 180 42.4 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
31976663 31976663 PRJNA609258_P_NODE_1978_length_1288_cov_9.093827_g1807_i0 PRJNA609258 1978 1288 9.093827 117.12849176 Brotonthovivens ammoniilytica 2981725 Bacteria Bacteria 47 0.0218   NR WP_158424257.1 2981725 g1807 i0 26.8 0.321428571428571 138 92 31.2 3 785 384 1 133 WP_158424257.1 hypothetical protein [Brotonthovivens ammoniilytica] diamond 414 47 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Brotonthovivens Brotonthovivens ammoniilytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;