RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA609258" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA609258 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28880082 28880082 PRJNA609258_P_NODE_50588_length_252_cov_0.871508_g50203_i0 PRJNA609258 50588 252 0.871508 2.19620016 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82 6.06e-16   NR XP_004339599.1 1257118 g50203 i0 60.6 0.845238095238095 71 27 83.3 1 245 36 540 610 XP_004339599.1 Ubox domain containing protein [Acanthamoeba castellanii str. Neff] diamond 213 82 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30269981 30269981 PRJNA609258_P_NODE_50912_length_252_cov_0.871508_g50527_i0 PRJNA609258 50912 252 0.871508 2.19620016 Dictyostelium purpureum 5786 Evosea other_Eukaryota 80.9 1.66e-15   NR XP_003287080.1 5786 g50527 i0 62.1 0.69047619047619 58 22 69 0 76 249 685 742 XP_003287080.1 uncharacterized protein DICPUDRAFT_151152 [Dictyostelium purpureum] diamond 174 80.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;