RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA608894" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30946504 30946504 PRJNA608894_P_NODE_34954_length_306_cov_1.158798_g34455_i0 PRJNA608894 34954 306 1.158798 3.54592188 Bacteria 2 Bacteria Bacteria 48.1 8.91e-4   NR WP_036448908.1 2122 g34455 i0 51.2 3.02941176470588 43 15 42.2 1 301 173 268 304 WP_036448908.1 DHH family phosphoesterase [Mycoplasmoides pirum] diamond 927 48.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pirum
31818442 31818442 PRJNA608894_P_NODE_39077_length_286_cov_3.544601_g38578_i0 PRJNA608894 39077 286 3.544601 10.13755886 Mycoplasmopsis bovis 28903 Bacteria Bacteria 153 1.61e-42   NR WP_318024972.1 28903 g38578 i0 78.9 8.95804195804196 95 20 99.7 0 2 286 310 404 WP_318024972.1 restriction endonuclease subunit S [Mycoplasmopsis bovis] diamond 2562 153 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis
32230069 32230069 PRJNA608894_P_NODE_60518_length_241_cov_0.916667_g60019_i0 PRJNA608894 60518 241 0.916667 2.20916747 Mycoplasma sp. HU2 2108 Bacteria Bacteria 113 2.0100000000000003e-27   NR WP_152908007.1 1664275 g60019 i0 98.4 0.784232365145228 63 1 78.4 0 52 240 343 405 WP_152908007.1 hypothetical protein [Mycoplasma sp. HU2014] diamond 189 113 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;