RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA608894" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608894 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28564465 28564465 PRJNA608894_P_NODE_22127_length_421_cov_1.370690_g21631_i0 PRJNA608894 22127 421 1.37069 5.7706049 Oligoflexus sp. 1971216 Bacteria Bacteria 80.9 4.67e-16   NR WP_324954760.1 1971216 g21631 i0 64.9 0.406175771971496 57 20 40.6 0 36 206 94 150 WP_324954760.1 hypothetical protein [Oligoflexus sp.] diamond 171 80.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
28659276 28659276 PRJNA608894_P_NODE_55087_length_246_cov_0.890173_g54588_i0 PRJNA608894 55087 246 0.890173 2.18982558 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 56.2 5.78e-7   NR MEC7274862.1 3034175 g54588 i0 37.5 1.76829268292683 72 44 86.6 1 12 224 222 293 MEC7274862.1 class I SAM-dependent methyltransferase [Bdellovibrionota bacterium] diamond 435 56.2 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29922298 29922298 PRJNA608894_P_NODE_51891_length_249_cov_0.875000_g51392_i0 PRJNA608894 51891 249 0.875 2.17875 Peredibacter starrii 28202 Bacteria Bacteria 143 1.0399999999999998e-37   NR WP_321399788.1 28202 g51392 i0 92.8 1 83 6 100 0 249 1 258 340 WP_321399788.1 ABC-F family ATP-binding cassette domain-containing protein [Peredibacter starrii] diamond 249 143 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
32861190 32861190 PRJNA608894_P_NODE_27780_length_354_cov_2.366548_g27281_i0 PRJNA608894 27780 354 2.366548 8.37757992 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 72.8 8.75e-13   NR MEE3080293.1 3034175 g27281 i0 43.4 0.703389830508475 83 41 69.5 2 352 107 147 224 MEE3080293.1 peroxiredoxin-like family protein [Bdellovibrionota bacterium] diamond 249 72.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;