RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA608894" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA608894 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3135979 3135979 PRJNA608894_P_NODE_18943_length_476_cov_1.744417_g18447_i0 PRJNA608894 18943 476 1.744417 8.30342492 Mesotoga sp. 2053577 Bacteria Bacteria 249 4.42e-77   NR MCB1222954.1 2053577 g18447 i0 74.1 4.97899159663866 158 41 99.6 0 476 3 121 278 MCB1222954.1 molecular chaperone DnaK [Mesotoga sp.] diamond 2370 249 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp.
5689519 5689519 PRJNA608894_P_NODE_57285_length_244_cov_0.900585_g56786_i0 PRJNA608894 57285 244 0.900585 2.1974274 Deinococcus fonticola 2528713 Bacteria Bacteria 159 2.5299999999999992e-43   NR WP_135230405.1 2528713 g56786 i0 100 0.995901639344262 81 0 99.6 0 244 2 160 240 WP_135230405.1 RelA/SpoT family protein [Deinococcus fonticola] diamond 243 159 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus fonticola
29258808 29258808 PRJNA608894_P_NODE_53889_length_247_cov_0.885057_g53390_i0 PRJNA608894 53889 247 0.885057 2.18609079 Deinococcus xinjiangensis 457454 Bacteria Bacteria 142 2.1599999999999996e-37   NR WP_353542509.1 457454 g53390 i0 100 0.801619433198381 66 0 80.2 0 2 199 596 661 WP_353542509.1 AfsR/SARP family transcriptional regulator [Deinococcus xinjiangensis] diamond 198 142 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
31185691 31185691 PRJNA608894_P_NODE_44675_length_267_cov_1.371134_g44176_i0 PRJNA608894 44675 267 1.371134 3.66092778 Deinococcus cavernae 2320857 Bacteria Bacteria 89 2.21e-19   NR WP_158591659.1 2320857 g44176 i0 97.8 0.50561797752809 45 1 50.6 0 229 95 1 45 WP_158591659.1 cytochrome c [Deinococcus cavernae] diamond 135 89 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus cavernae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;