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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA608660" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608660 · 24 ✖

analysis 1

  • diamond · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1860633 1860633 PRJNA608660_P_NODE_31422_length_227_cov_2.337079_g31066_i0 PRJNA608660 31422 227 2.337079 5.30516933 Pseudobdellovibrio 2862745 Bacteria Bacteria 137 4.859999999999999e-37   NR WP_235044643.1 453816 g31066 i0 90.7 4.95594713656388 75 7 99.1 0 3 227 225 299 WP_235044643.1 peptide chain release factor 2 [Pseudobdellovibrio exovorus] diamond 1125 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
12063927 12063927 PRJNA608660_P_NODE_14650_length_383_cov_2.556886_g14297_i0 PRJNA608660 14650 383 2.556886 9.79287338 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 145 3.51e-39   NR MFN8847863.1 2053517 g14297 i0 91.7 0.563968668407311 72 6 56.4 0 375 160 56 127 MFN8847863.1 bifunctional 2-methylcitrate synthase/citrate synthase [Bdellovibrionales bacterium] diamond 216 145 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
12064175 12064175 PRJNA608660_P_NODE_41310_length_183_cov_2.216418_g40953_i0 PRJNA608660 41310 183 2.216418 4.05604494 Bdellovibrio sp. 28201 Bacteria Bacteria 55.8 2.09e-7   NR MBC7466258.1 28201 g40953 i0 51 0.80327868852459 49 22 80.3 1 14 160 115 161 MBC7466258.1 hypothetical protein [Bdellovibrio sp.] diamond 147 55.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
13900837 13900837 PRJNA608660_P_NODE_17991_length_338_cov_3.958478_g17636_i0 PRJNA608660 17991 338 3.958478 13.37965564 Bacteria 2 Bacteria Bacteria 111 1.03e-25   NR MBL7557961.1 2026715 g17636 i0 85.9 2.89349112426035 64 9 56.8 0 329 138 642 705 MBL7557961.1 cadmium-translocating P-type ATPase [Pseudobdellovibrionaceae bacterium] diamond 978 112 0.991071428571429 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
26763578 26763578 PRJNA608660_P_NODE_48561_length_164_cov_0.904348_g48204_i0 PRJNA608660 48561 164 0.904348 1.48313072 Bdellovibrio sp. 28201 Bacteria Bacteria 87.4 8.63e-19   NR MBC7420711.1 28201 g48204 i0 84.1 2.41463414634146 44 7 80.5 0 156 25 256 299 MBC7420711.1 hypothetical protein [Bdellovibrio sp.] diamond 396 87.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
26858962 26858962 PRJNA608660_P_NODE_21641_length_299_cov_1.640000_g21285_i0 PRJNA608660 21641 299 1.64 4.9036 Oligoflexia bacterium 2599941 Bacteria Bacteria 94.7 3.32e-20   NR GIL17027.1 2599941 g21285 i0 48.9 0.903010033444816 90 46 90.3 0 29 298 106 195 GIL17027.1 MAG: hypothetical protein BroJett040_07780 [Oligoflexia bacterium] diamond 270 94.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
26890517 26890517 PRJNA608660_P_NODE_14021_length_392_cov_9.247813_g13669_i0 PRJNA608660 14021 392 9.247813 36.25142696 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 144 1.6499999999999999e-38   NR MBK8204757.1 2053517 g13669 i0 63.8 2.91581632653061 127 46 97.2 0 1 381 41 167 MBK8204757.1 TolC family protein [Bdellovibrionales bacterium] diamond 1143 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27775263 27775263 PRJNA608660_P_NODE_47024_length_166_cov_3.085470_g46667_i0 PRJNA608660 47024 166 3.08547 5.1218802 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 65.1 1.41e-10   NR MFP5459035.1 3058048 g46667 i0 69.8 0.77710843373494 43 13 77.7 0 132 4 1 43 MFP5459035.1 exonuclease domain-containing protein [Bacteriovoracia bacterium] diamond 129 65.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
27869648 27869648 PRJNA608660_P_NODE_33825_length_215_cov_1.078313_g33469_i0 PRJNA608660 33825 215 1.078313 2.31837295 Bdellovibrionales bacterium RIFCSPHIGHO2_ 2053517 Bacteria Bacteria 63.5 9.86e-11   NR OFZ31042.1 1797389 g33469 i0 61.5 0.725581395348837 52 20 72.6 0 54 209 81 132 OFZ31042.1 MAG: hypothetical protein A2622_00095 [Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29] diamond 156 63.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29
27932938 27932938 PRJNA608660_P_NODE_46665_length_167_cov_1.322034_g46308_i0 PRJNA608660 46665 167 1.322034 2.20779678 Halobacteriovorax sp. 2020862 Bacteria Bacteria 87.8 1.6e-18   NR MBH47361.1 2020862 g46308 i0 63 0.970059880239521 54 20 97 0 163 2 46 99 MBH47361.1 hypothetical protein [Halobacteriovorax sp.] diamond 162 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp.
27996194 27996194 PRJNA608660_P_NODE_4785_length_660_cov_4.238953_g4492_i0 PRJNA608660 4785 660 4.238953 27.9770898 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 67 7.28e-9   NR MDC0980284.1 2053517 g4492 i0 33.3 0.545454545454545 120 75 53.2 3 11 361 367 484 MDC0980284.1 hypothetical protein [Bdellovibrionales bacterium] diamond 360 67 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28198484 28198484 PRJNA608660_P_NODE_12346_length_422_cov_11.056300_g11999_i0 PRJNA608660 12346 422 11.0563 46.657586 Bdellovibrio 958 Bacteria Bacteria 117 1.2399999999999999e-28   NR MBC7465877.1 28201 g11999 i0 43.5 1.96208530805687 138 78 98.1 0 414 1 74 211 MBC7465877.1 glycosyltransferase family 2 protein [Bdellovibrio sp.] diamond 828 118 0.991525423728814 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29069772 29069772 PRJNA608660_P_NODE_50908_length_153_cov_3.394231_g50551_i0 PRJNA608660 50908 153 3.394231 5.19317343 Bdellovibrio sp. 28201 Bacteria Bacteria 89 2.89e-19   NR MBC7466874.1 28201 g50551 i0 87.2 2.76470588235294 47 6 92.2 0 12 152 33 79 MBC7466874.1 metallophosphoesterase [Bdellovibrio sp.] diamond 423 89 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29777279 29777279 PRJNA608660_P_NODE_5931_length_603_cov_1.593863_g5620_i0 PRJNA608660 5931 603 1.593863 9.61099389 Bdellovibrio 958 Bacteria Bacteria 147 4.5e-40   NR MBC7464632.1 28201 g5620 i0 61.9 1.11940298507463 113 43 56.2 0 601 263 147 259 MBC7464632.1 AgmX/PglI C-terminal domain-containing protein [Bdellovibrio sp.] diamond 675 147 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30048340 30048340 PRJNA608660_P_NODE_6991_length_562_cov_13.411306_g6664_i0 PRJNA608660 6991 562 13.411306 75.37153972 Bdellovibrio sp. 28201 Bacteria Bacteria 174 1.02e-46   NR MBC7465812.1 28201 g6664 i0 46.4 1.02491103202847 192 92 96.6 2 552 10 601 792 MBC7465812.1 hypothetical protein [Bdellovibrio sp.] diamond 576 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30301748 30301748 PRJNA608660_P_NODE_11612_length_436_cov_33.529716_g11265_i0 PRJNA608660 11612 436 33.529716 146.18956176 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 182 7.209999999999998e-54   NR WP_041872138.1 1569284 g11265 i0 64.1 3.99082568807339 145 51 99.1 1 5 436 7 151 WP_041872138.1 hydroxymethylglutaryl-CoA lyase [Bdellovibrio sp. ArHS] diamond 1740 182 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
30301752 30301752 PRJNA608660_P_NODE_7032_length_561_cov_2.542969_g6705_i0 PRJNA608660 7032 561 2.542969 14.26605609 Bdellovibrionales bacterium RIFCSPHIGHO2_ 2053517 Bacteria Bacteria 211 2.63e-60   NR OFZ31493.1 1797389 g6705 i0 63.3 0.903743315508021 169 62 90.4 0 554 48 187 355 OFZ31493.1 MAG: hypothetical protein A2622_02600 [Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29] diamond 507 211 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29
30680216 30680216 PRJNA608660_P_NODE_15473_length_370_cov_16.171340_g15120_i0 PRJNA608660 15473 370 16.17134 59.833958 Bdellovibrionales bacterium RIFOXYC1_FULL_54_43 1797397 Bacteria Bacteria 88.2 1.65e-18   NR OFZ55204.1 1797397 g15120 i0 46.7 1.48378378378378 90 48 73 0 87 356 32 121 OFZ55204.1 MAG: hypothetical protein A2428_17145 [Bdellovibrionales bacterium RIFOXYC1_FULL_54_43] diamond 549 88.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYC1_FULL_54_43
30820003 30820003 PRJNA608660_P_NODE_11654_length_435_cov_11.536269_g11307_i0 PRJNA608660 11654 435 11.536269 50.18277015 Pseudomonadati 3379134 Bacteria Bacteria 63.9 1.16e-8   NR MBI4925345.1 28201 g11307 i0 36.8 1.49655172413793 68 43 46.9 0 240 37 454 521 MBI4925345.1 TonB-dependent receptor [Bdellovibrio sp.] diamond 651 63.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31597365 31597365 PRJNA608660_P_NODE_50836_length_154_cov_2.533333_g50479_i0 PRJNA608660 50836 154 2.533333 3.90133282 Bdellovibrio sp. 28201 Bacteria Bacteria 52.8 3.24e-6   NR MBC7467136.1 28201 g50479 i0 62.2 1.44155844155844 37 14 72.1 0 43 153 309 345 MBC7467136.1 lytic transglycosylase domain-containing protein [Bdellovibrio sp.] diamond 222 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31628721 31628721 PRJNA608660_P_NODE_44036_length_174_cov_1.168000_g43679_i0 PRJNA608660 44036 174 1.168 2.03232 Oligoflexia bacterium 2599941 Bacteria Bacteria 84.7 2.18e-17   NR GIL17845.1 2599941 g43679 i0 72.4 1 58 15 100 1 174 1 50 106 GIL17845.1 MAG: serine protease [Oligoflexia bacterium] diamond 174 84.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
31723559 31723559 PRJNA608660_P_NODE_4657_length_668_cov_14.555735_g4365_i0 PRJNA608660 4657 668 14.555735 97.2323098 Bdellovibrio 958 Bacteria Bacteria 102 2.84e-24   NR WP_374074086.1 958 g4365 i0 70.3 0.332335329341317 74 21 32.8 1 40 258 1 74 WP_374074086.1 MULTISPECIES: Sec-independent protein translocase subunit TatA/TatB [Bdellovibrio] diamond 222 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
32103230 32103230 PRJNA608660_P_NODE_41818_length_181_cov_2.022727_g41461_i0 PRJNA608660 41818 181 2.022727 3.66113587 Bdellovibrio 958 Bacteria Bacteria 80.1 1.9e-16   NR WP_347358122.1 958 g41461 i0 67.2 0.961325966850829 58 19 96.1 0 179 6 30 87 WP_347358122.1 MULTISPECIES: coenzyme F420-0:L-glutamate ligase [Bdellovibrio] diamond 174 80.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
32685239 32685239 PRJNA608660_P_NODE_46060_length_168_cov_1.436975_g45703_i0 PRJNA608660 46060 168 1.436975 2.414118 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 97.4 1.0300000000000001e-22   NR MBC7465590.1 28201 g45703 i0 82.1 2.96428571428571 56 10 100 0 168 1 150 205 MBC7465590.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein [Bdellovibrio sp.] diamond 498 97.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;