RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA608660" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA608660 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26668339 26668339 PRJNA608660_P_NODE_20021_length_315_cov_3.500000_g19665_i0 PRJNA608660 20021 315 3.5 11.025 Synergistaceae bacterium 2053624 Bacteria Bacteria 114 2.74e-27   NR MBP8632469.1 2053624 g19665 i0 93.3 1.14285714285714 60 4 57.1 0 313 134 121 180 MBP8632469.1 glycosyltransferase family 2 protein [Synergistaceae bacterium] diamond 360 114 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
28785256 28785256 PRJNA608660_P_NODE_42567_length_179_cov_0.923077_g42210_i0 PRJNA608660 42567 179 0.923077 1.65230783 uncultured Truepera sp. 543023 Bacteria Bacteria 49.3 7.69e-5   NR CAA9553009.1 543023 g42210 i0 74.1 0.452513966480447 27 7 45.3 0 82 2 1 27 CAA9553009.1 MAG: Cell division protein FtsH [uncultured Truepera sp.] diamond 81 49.3 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
31660187 31660187 PRJNA608660_P_NODE_26677_length_256_cov_9.405797_g26321_i0 PRJNA608660 26677 256 9.405797 24.07884032 Mesotoga prima 1184387 Bacteria Bacteria 102 5.66e-26   NR WP_333641478.1 1184387 g26321 i0 86.8 0.62109375 53 7 62.1 0 245 87 52 104 WP_333641478.1 hypothetical protein, partial [Mesotoga prima] diamond 159 102 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga prima
32230047 32230047 PRJNA608660_P_NODE_21018_length_305_cov_2.171875_g20662_i0 PRJNA608660 21018 305 2.171875 6.62421875 Mesotoga prima 1184387 Bacteria Bacteria 183 2.3299999999999997e-57   NR WP_333640980.1 1184387 g20662 i0 98.9 0.865573770491803 88 1 86.6 0 305 42 50 137 WP_333640980.1 YkgJ family cysteine cluster protein [Mesotoga prima] diamond 264 183 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga prima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;