RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA606583" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA606583 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28785234 28785234 PRJNA606583_P_NODE_42307_length_151_cov_2.263158_g41878_i0 PRJNA606583 42307 151 2.263158 3.41736858 Silvibacterium dinghuense 1560006 Bacteria Bacteria 41.6 0.0279   NR WP_129209428.1 1560006 g41878 i0 48.8 1.60927152317881 43 19 79.5 1 7 126 228 270 WP_129209428.1 glycoside hydrolase family 3 C-terminal domain-containing protein [Silvibacterium dinghuense] diamond 243 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Silvibacterium Silvibacterium dinghuense
30048320 30048320 PRJNA606583_P_NODE_27031_length_210_cov_2.156069_g26602_i0 PRJNA606583 27031 210 2.156069 4.5277449 Terracidiphilus sp. 1964191 Bacteria Bacteria 43.5 0.012   NR HEX7729701.1 1964191 g26602 i0 41.7 0.685714285714286 48 28 68.6 0 6 149 213 260 HEX7729701.1 hypothetical protein [Terracidiphilus sp.] diamond 144 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
30743596 30743596 PRJNA606583_P_NODE_15394_length_323_cov_1.269231_g14965_i0 PRJNA606583 15394 323 1.269231 4.09961613 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 42 0.0249   NR HXA52628.1 3069120 g14965 i0 51.5 0.306501547987616 33 16 30.7 0 303 205 24 56 HXA52628.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 99 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;