RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA606583" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA606583 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18435732 18435732 PRJNA606583_P_NODE_38095_length_162_cov_1.248000_g37666_i0 PRJNA606583 38095 162 1.248 2.02176 Planctomycetota bacterium 2026780 Bacteria Bacteria 58.9 2.47e-8   NR MFH1227454.1 2026780 g37666 i0 48.1 1.92592592592593 52 27 96.3 0 162 7 88 139 MFH1227454.1 tetratricopeptide repeat protein [Planctomycetota bacterium] diamond 312 58.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27806843 27806843 PRJNA606583_P_NODE_41784_length_153_cov_0.974138_g41355_i0 PRJNA606583 41784 153 0.974138 1.49043114 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0205   NR MBO7107012.1 2026799 g41355 i0 40.7 2.92156862745098 54 24 92.2 3 10 150 19 71 MBO7107012.1 ATP-binding cassette domain-containing protein [Verrucomicrobiota bacterium] diamond 447 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;