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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA605033" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 34 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA605033 · 34 ✖

analysis 1

  • diamond · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26731492 26731492 PRJNA605033_P_NODE_16821_length_347_cov_1.964744_g15271_i0 PRJNA605033 16821 347 1.964744 6.81766168 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 80.9 5.22e-15   NR HLH52822.1 2499141 g15271 i0 39.3 1.01152737752161 117 60 91.6 1 321 4 402 518 HLH52822.1 M48 family metallopeptidase [Verrucomicrobiia bacterium] diamond 351 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27029958 27029958 PRJNA605033_P_NODE_11722_length_407_cov_1.637097_g10191_i0 PRJNA605033 11722 407 1.637097 6.66298479 Bacteria 2 Bacteria Bacteria 64.3 5.21e-9   NR PAZ00509.1 1982325 g10191 i0 36.6 4.87223587223587 82 38 50.1 1 1 204 262 343 PAZ00509.1 MAG: SAM-dependent methyltransferase [Spartobacteria bacterium AMD-G4] diamond 1983 64.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria       Spartobacteria bacterium AMD-G4
27048467 27048467 PRJNA605033_P_NODE_104802_length_222_cov_1.871658_g103233_i0 PRJNA605033 104802 222 1.871658 4.15508076 Opitutus sp. GAS368 1882749 Bacteria Bacteria 61.2 8.07e-9   NR WP_091057352.1 1882749 g103233 i0 59.7 0.837837837837838 62 13 83.8 1 3 188 349 398 WP_091057352.1 N-acetylmuramoyl-L-alanine amidase family protein [Opitutus sp. GAS368] diamond 186 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
27301372 27301372 PRJNA605033_P_NODE_159223_length_187_cov_1.723684_g157654_i0 PRJNA605033 159223 187 1.723684 3.22328908 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 40 0.037   NR HOX64119.1 2026799 g157654 i0 42 0.802139037433155 50 28 80.2 1 15 164 31 79 HOX64119.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 150 40 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27396336 27396336 PRJNA605033_P_NODE_57063_length_230_cov_2.046154_g55495_i0 PRJNA605033 57063 230 2.046154 4.7061542 Opitutaceae bacterium 2006848 Bacteria Bacteria 48.9 1.82e-4   NR MEO6246409.1 2006848 g55495 i0 80 0.326086956521739 25 5 32.6 0 156 230 233 257 MEO6246409.1 FkbM family methyltransferase [Opitutaceae bacterium] diamond 75 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27585617 27585617 PRJNA605033_P_NODE_61004_length_225_cov_2.936842_g59436_i0 PRJNA605033 61004 225 2.936842 6.6078945 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 65.5 2.85e-10   NR HUK81278.1 2499141 g59436 i0 66.7 0.64 48 9 64 1 146 3 668 708 HUK81278.1 DNA/RNA non-specific endonuclease [Verrucomicrobiia bacterium] diamond 144 65.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27964430 27964430 PRJNA605033_P_NODE_98905_length_222_cov_1.978610_g97336_i0 PRJNA605033 98905 222 1.97861 4.3925142 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 46.2 0.00175   NR MFH1498518.1 2026799 g97336 i0 76 1.27027027027027 25 6 33.8 0 222 148 298 322 MFH1498518.1 cellulase family glycosylhydrolase [Verrucomicrobiota bacterium] diamond 282 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28167181 28167181 PRJNA605033_P_NODE_50205_length_239_cov_2.308824_g48637_i0 PRJNA605033 50205 239 2.308824 5.51808936 Bacteria 2 Bacteria Bacteria 83.2 2.03e-16   NR MDB6039168.1 2026801 g48637 i0 49.4 3.96652719665272 79 40 99.2 0 238 2 605 683 MDB6039168.1 metalloendopeptidase [Verrucomicrobiales bacterium] diamond 948 84 0.990476190476191 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28374868 28374868 PRJNA605033_P_NODE_215626_length_160_cov_1.448000_g214057_i0 PRJNA605033 215626 160 1.448 2.3168 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 51.6 8.72e-6   NR HWY77830.1 2499141 g214057 i0 59.6 3.825 52 21 97.5 0 158 3 569 620 HWY77830.1 proprotein convertase P-domain-containing protein [Verrucomicrobiia bacterium] diamond 612 51.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28501331 28501331 PRJNA605033_P_NODE_76387_length_222_cov_2.673797_g74818_i0 PRJNA605033 76387 222 2.673797 5.93582934 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 49.3 1.34e-4   NR MDF1738047.1 2026801 g74818 i0 91.7 0.324324324324324 24 2 32.4 0 74 3 26 49 MDF1738047.1 FAD-linked oxidase C-terminal domain-containing protein [Verrucomicrobiales bacterium] diamond 72 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
29240646 29240646 PRJNA605033_P_NODE_139649_length_205_cov_0.929412_g138080_i0 PRJNA605033 139649 205 0.929412 1.9052946 Bacteria 2 Bacteria Bacteria 125 6.84e-32   NR PAW76028.1 1982333 g138080 i0 83.8 2.97073170731707 68 11 99.5 0 205 2 315 382 PAW76028.1 MAG: ribulokinase [Verrucomicrobia bacterium Tous-C9LFEB] diamond 609 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium Tous-C9LFEB
29322072 29322072 PRJNA605033_P_NODE_234189_length_154_cov_1.344538_g232620_i0 PRJNA605033 234189 154 1.344538 2.07058852 Akkermansia muciniphila 239935 Bacteria Bacteria 55.5 9.63e-8   NR WP_143247004.1 239935 g232620 i0 56.8 0.720779220779221 37 16 72.1 0 152 42 1 37 WP_143247004.1 tetratricopeptide repeat protein, partial [Akkermansia muciniphila] diamond 111 55.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
29763955 29763955 PRJNA605033_P_NODE_106071_length_222_cov_1.855615_g104502_i0 PRJNA605033 106071 222 1.855615 4.1194653 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.9 0.00613   NR MCX6936305.1 2026799 g104502 i0 83.3 0.648648648648649 24 4 32.4 0 221 150 87 110 MCX6936305.1 META domain-containing protein [Verrucomicrobiota bacterium] diamond 144 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29795613 29795613 PRJNA605033_P_NODE_210611_length_162_cov_0.944882_g209042_i0 PRJNA605033 210611 162 0.944882 1.53070884 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 85.9 8.63e-19   NR MBV9126778.1 2026799 g209042 i0 70.4 2 54 16 100 0 1 162 162 215 MBV9126778.1 TonB-dependent receptor [Verrucomicrobiota bacterium] diamond 324 85.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29808832 29808832 PRJNA605033_P_NODE_57091_length_230_cov_1.979487_g55523_i0 PRJNA605033 57091 230 1.979487 4.5528201 PVC group 1783257 Bacteria Bacteria 89.4 1.23e-18   NR MEA3145584.1 2026799 g55523 i0 60.5 8.92173913043478 76 26 99.1 1 229 2 51 122 MEA3145584.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 2052 89.7 0.996655518394649 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29890700 29890700 PRJNA605033_P_NODE_83011_length_222_cov_2.395722_g81442_i0 PRJNA605033 83011 222 2.395722 5.31850284 Opitutus sp. 1913982 Bacteria Bacteria 45.8 0.00205   NR HTO04302.1 1913982 g81442 i0 79.2 0.324324324324324 24 5 32.4 0 73 2 33 56 HTO04302.1 ROK family protein [Opitutus sp.] diamond 72 45.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
30396428 30396428 PRJNA605033_P_NODE_102433_length_222_cov_1.914439_g100864_i0 PRJNA605033 102433 222 1.914439 4.25005458 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 52.4 7.86e-6   NR MDW8311101.1 2026801 g100864 i0 92 0.675675675675676 25 2 33.8 0 222 148 134 158 MDW8311101.1 LOG family protein [Verrucomicrobiales bacterium] diamond 150 52.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30428007 30428007 PRJNA605033_P_NODE_110013_length_222_cov_1.791444_g108444_i0 PRJNA605033 110013 222 1.791444 3.97700568 Luteolibacter algae 454151 Bacteria Bacteria 60.5 1.64e-8   NR WP_386818304.1 454151 g108444 i0 48.6 0.972972972972973 72 24 97.3 1 222 7 747 805 WP_386818304.1 cytochrome-c oxidase, cbb3-type subunit I [Luteolibacter algae] diamond 216 60.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter algae
30775281 30775281 PRJNA605033_P_NODE_109094_length_222_cov_1.807487_g107525_i0 PRJNA605033 109094 222 1.807487 4.01262114 Opitutus sp. ER46 2161864 Bacteria Bacteria 72 1.27e-12   NR WP_107835033.1 2161864 g107525 i0 53.4 0.986486486486487 73 21 98.6 1 3 221 193 252 WP_107835033.1 NosD domain-containing protein [Opitutus sp. ER46] diamond 219 72 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. ER46
30869903 30869903 PRJNA605033_P_NODE_179574_length_175_cov_2.042857_g178005_i0 PRJNA605033 179574 175 2.042857 3.57499975 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 85.1 5.54e-18   NR MBM3888688.1 2026799 g178005 i0 64.9 1.95428571428571 57 20 97.7 0 173 3 105 161 MBM3888688.1 alpha/beta hydrolase [Verrucomicrobiota bacterium] diamond 342 85.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30996354 30996354 PRJNA605033_P_NODE_146234_length_198_cov_0.981595_g144665_i0 PRJNA605033 146234 198 0.981595 1.9435581 Opitutaceae bacterium 2006848 Bacteria Bacteria 117 1.2299999999999998e-29   NR MBL9201898.1 2006848 g144665 i0 75.4 1.96969696969697 65 16 98.5 0 197 3 243 307 MBL9201898.1 chemotaxis response regulator protein-glutamate methylesterase [Opitutaceae bacterium] diamond 390 117 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31009479 31009479 PRJNA605033_P_NODE_140654_length_203_cov_3.482143_g139085_i0 PRJNA605033 140654 203 3.482143 7.06875029 Pseudomonadati 3379134 Bacteria Bacteria 64.3 4.8e-10   NR MCU0784749.1 2026799 g139085 i0 49.2 3.45812807881773 65 32 96.1 1 195 1 168 231 MCU0784749.1 TrmH family RNA methyltransferase [Verrucomicrobiota bacterium] diamond 702 64.7 0.993817619783617 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31388993 31388993 PRJNA605033_P_NODE_47476_length_243_cov_2.370192_g45908_i0 PRJNA605033 47476 243 2.370192 5.75956656 Pseudomonadati 3379134 Bacteria Bacteria 45.8 0.00286   NR MCX6898749.1 2026799 g45908 i0 76.7 1.85185185185185 30 7 37 0 9 98 1 30 MCX6898749.1 electron transfer flavoprotein subunit alpha [Verrucomicrobiota bacterium] diamond 450 46.2 0.991341991341991 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31502381 31502381 PRJNA605033_P_NODE_195336_length_168_cov_1.172932_g193767_i0 PRJNA605033 195336 168 1.172932 1.97052576 Opitutaceae bacterium 2006848 Bacteria Bacteria 57.8 4.51e-8   NR MBE7539265.1 2006848 g193767 i0 56.4 1.96428571428571 55 24 98.2 0 166 2 48 102 MBE7539265.1 FCD domain-containing protein [Opitutaceae bacterium] diamond 330 57.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31850039 31850039 PRJNA605033_P_NODE_79677_length_222_cov_2.524064_g78108_i0 PRJNA605033 79677 222 2.524064 5.60342208 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 54.3 1.97e-7   NR HTG43950.1 2499141 g78108 i0 100 0.648648648648649 24 0 32.4 0 220 149 22 45 HTG43950.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 144 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31976616 31976616 PRJNA605033_P_NODE_8918_length_464_cov_2.610723_g7418_i0 PRJNA605033 8918 464 2.610723 12.11375472 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 45.1 0.0321   NR MBT8043687.1 2499141 g7418 i0 34.8 0.446120689655172 69 45 44.6 0 110 316 90 158 MBT8043687.1 BatD family protein [Verrucomicrobiia bacterium] diamond 207 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32103149 32103149 PRJNA605033_P_NODE_102818_length_222_cov_1.903743_g101249_i0 PRJNA605033 102818 222 1.903743 4.22630946 Opitutaceae bacterium 2006848 Bacteria Bacteria 46.2 0.00173   NR MFA6286067.1 2006848 g101249 i0 79.2 1.2972972972973 24 5 32.4 0 4 75 62 85 MFA6286067.1 GspE/PulE family protein [Opitutaceae bacterium] diamond 288 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32116537 32116537 PRJNA605033_P_NODE_213378_length_161_cov_0.952381_g211809_i0 PRJNA605033 213378 161 0.952381 1.53333341 Verrucomicrobiota 74201 Bacteria Bacteria 78.6 2.85e-15   NR WP_007416501.1 1032527 g211809 i0 71.7 18.7639751552795 53 15 98.8 0 160 2 380 432 WP_007416501.1 amino acid permease [Pedosphaera parvula] diamond 3021 79.3 0.991172761664565 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
32179865 32179865 PRJNA605033_P_NODE_84718_length_222_cov_2.336898_g83149_i0 PRJNA605033 84718 222 2.336898 5.18791356 Pseudomonadati 3379134 Bacteria Bacteria 59.7 3.03e-8   NR HVR65860.1 2499141 g83149 i0 50 4.98648648648649 74 25 100 1 222 1 479 540 HVR65860.1 Na/Pi cotransporter family protein [Verrucomicrobiia bacterium] diamond 1107 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32546401 32546401 PRJNA605033_P_NODE_181719_length_174_cov_1.892086_g180150_i0 PRJNA605033 181719 174 1.892086 3.29222964 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 61.2 4.33e-9   NR MBK9990426.1 2026799 g180150 i0 48.2 0.96551724137931 56 29 96.6 0 3 170 728 783 MBK9990426.1 PAS domain S-box protein [Verrucomicrobiota bacterium] diamond 168 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32577926 32577926 PRJNA605033_P_NODE_210859_length_161_cov_5.198413_g209290_i0 PRJNA605033 210859 161 5.198413 8.36944493 Opitutaceae bacterium 2006848 Bacteria Bacteria 72.4 3.87e-13   NR MBE2215460.1 2006848 g209290 i0 76.5 1.90062111801242 51 12 95 0 157 5 350 400 MBE2215460.1 helix-turn-helix domain-containing protein [Opitutaceae bacterium] diamond 306 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32703606 32703606 PRJNA605033_P_NODE_194200_length_168_cov_2.135338_g192631_i0 PRJNA605033 194200 168 2.135338 3.58736784 Prosthecobacter fluviatilis 445931 Bacteria Bacteria 49.7 4.8e-5   NR WP_377164662.1 445931 g192631 i0 56.5 0.821428571428571 46 20 82.1 0 26 163 1237 1282 WP_377164662.1 autotransporter-associated beta strand repeat-containing protein [Prosthecobacter fluviatilis] diamond 138 49.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fluviatilis
32797931 32797931 PRJNA605033_P_NODE_222200_length_158_cov_0.959350_g220631_i0 PRJNA605033 222200 158 0.95935 1.515773 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 95.9 2.0200000000000003e-21   NR MBV9658475.1 2026799 g220631 i0 78.8 1.95569620253165 52 11 98.7 0 158 3 186 237 MBV9658475.1 NAD(P)/FAD-dependent oxidoreductase [Verrucomicrobiota bacterium] diamond 309 95.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32861110 32861110 PRJNA605033_P_NODE_133360_length_212_cov_3.118644_g131791_i0 PRJNA605033 133360 212 3.118644 6.61152528 Chthoniobacter sp. 2510640 Bacteria Bacteria 77.8 5.43e-15   NR HEY3898454.1 2510640 g131791 i0 52.1 1.00471698113208 71 32 97.6 1 210 4 172 242 HEY3898454.1 DUF4261 domain-containing protein [Chthoniobacter sp.] diamond 213 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;