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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA603943" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 29 ✖

tax_kingdom 1

bioproject 1

  • PRJNA603943 · 29 ✖

analysis 1

  • diamond · 29 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
577300 577300 PRJNA603943_P_NODE_4361_length_715_cov_1.199377_g4183_i0 PRJNA603943 4361 715 1.199377 8.57554555 Myxococcaceae bacterium 2484252 Bacteria Bacteria 379 6.1e-129   NR RYZ13579.1 2484252 g4183 i0 79.6 0.986013986013986 235 48 98.6 0 9 713 43 277 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 705 379 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
10071917 10071917 PRJNA603943_P_NODE_68908_length_242_cov_0.899408_g68716_i0 PRJNA603943 68908 242 0.899408 2.17656736 Labilithrix 1524217 Bacteria Bacteria 107 5.07e-25   NR WP_169927527.1 1391654 g68716 i0 72 4.88429752066116 82 20 97.9 1 240 4 58 139 WP_169927527.1 diguanylate cyclase [Labilithrix luteola] diamond 1182 108 0.990740740740741 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
12057234 12057234 PRJNA603943_P_NODE_66950_length_243_cov_0.905882_g66758_i0 PRJNA603943 66950 243 0.905882 2.20129326 Labilithrix sp. 1971228 Bacteria Bacteria 112 1.5500000000000002e-26   NR HVJ89238.1 1971228 g66758 i0 75 3.46913580246914 68 14 80.2 1 47 241 65 132 HVJ89238.1 glycosyltransferase family 39 protein [Labilithrix sp.] diamond 843 112 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
15880676 15880676 PRJNA603943_P_NODE_59833_length_247_cov_0.885057_g59641_i0 PRJNA603943 59833 247 0.885057 2.18609079 Myxococcales bacterium 2026763 Bacteria Bacteria 87.4 2.97e-18   NR MCA9584421.1 2026763 g59641 i0 51.2 0.995951417004049 82 40 99.6 0 1 246 18 99 MCA9584421.1 hypothetical protein [Myxococcales bacterium] diamond 246 87.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
26636723 26636723 PRJNA603943_P_NODE_55901_length_249_cov_1.312500_g55709_i0 PRJNA603943 55901 249 1.3125 3.268125 Polyangiaceae bacterium 2268199 Bacteria Bacteria 117 7.26e-29   NR HVZ36904.1 2268199 g55709 i0 84.1 1.97590361445783 82 10 98.8 1 247 2 66 144 HVZ36904.1 IS66 family transposase [Polyangiaceae bacterium] diamond 492 117 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
26636730 26636730 PRJNA603943_P_NODE_66801_length_243_cov_0.905882_g66609_i0 PRJNA603943 66801 243 0.905882 2.20129326 Myxococcales bacterium 2026763 Bacteria Bacteria 55.5 6.86e-7   NR MBK6459719.1 2026763 g66609 i0 44.8 0.716049382716049 58 32 71.6 0 179 6 137 194 MBK6459719.1 hypothetical protein [Myxococcales bacterium] diamond 174 55.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27301304 27301304 PRJNA603943_P_NODE_56443_length_249_cov_0.875000_g56251_i0 PRJNA603943 56443 249 0.875 2.17875 Archangiaceae bacterium 2684409 Bacteria Bacteria 64.7 7.43e-10   NR MBM4779431.1 2684409 g56251 i0 54.7 0.771084337349398 64 22 77.1 3 49 240 1 57 MBM4779431.1 hypothetical protein [Archangiaceae bacterium] diamond 192 64.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae   Archangiaceae bacterium
27427845 27427845 PRJNA603943_P_NODE_59523_length_247_cov_0.885057_g59331_i0 PRJNA603943 59523 247 0.885057 2.18609079 Polyangiaceae bacterium 2268199 Bacteria Bacteria 94.7 1.74e-20   NR MBK8255090.1 2268199 g59331 i0 54.3 1.96761133603239 81 37 98.4 0 5 247 236 316 MBK8255090.1 mechanosensitive ion channel [Polyangiaceae bacterium] diamond 486 94.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27756866 27756866 PRJNA603943_P_NODE_67184_length_243_cov_0.905882_g66992_i0 PRJNA603943 67184 243 0.905882 2.20129326 Pseudomonadati 3379134 Bacteria Bacteria 96.7 2.8e-21   NR RLA95620.1 2026735 g66992 i0 59 8.65432098765432 78 31 96.3 1 236 3 101 177 RLA95620.1 MAG: peptidase [Deltaproteobacteria bacterium] diamond 2103 97.1 0.995880535530381 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28059034 28059034 PRJNA603943_P_NODE_51505_length_254_cov_1.513812_g51313_i0 PRJNA603943 51505 254 1.513812 3.84508248 Sandaracinus sp. 2024858 Bacteria Bacteria 70.5 7.71e-13   NR MAT24617.1 2024858 g51313 i0 45.8 2.59842519685039 72 39 85 0 18 233 13 84 MAT24617.1 hypothetical protein [Sandaracinus sp.] diamond 660 70.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
28279907 28279907 PRJNA603943_P_NODE_29386_length_331_cov_2.984496_g29194_i0 PRJNA603943 29386 331 2.984496 9.87868176 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 86.3 1.91e-19   NR MBN2798920.1 2026735 g29194 i0 48.3 0.788519637462236 87 45 78.9 0 1 261 4 90 MBN2798920.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 261 86.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28279921 28279921 PRJNA603943_P_NODE_4966_length_675_cov_2.898671_g4784_i0 PRJNA603943 4966 675 2.898671 19.56602925 Stigmatella hybrida 394097 Bacteria Bacteria 68.9 2.04e-9   NR WP_225412049.1 394097 g4784 i0 43.2 0.711111111111111 81 42 36 1 360 118 1920 1996 WP_225412049.1 RHS repeat-associated core domain-containing protein [Stigmatella hybrida] diamond 480 68.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella hybrida
28640852 28640852 PRJNA603943_P_NODE_62207_length_246_cov_0.890173_g62015_i0 PRJNA603943 62207 246 0.890173 2.18982558 Sorangium 39643 Bacteria Bacteria 85.9 1.46e-17   NR WP_129352675.1 56 g62015 i0 56.3 1.9390243902439 80 35 97.6 0 3 242 230 309 WP_129352675.1 hybrid sensor histidine kinase/response regulator [Sorangium cellulosum] diamond 477 86.3 0.995365005793743 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
28785115 28785115 PRJNA603943_P_NODE_52607_length_251_cov_0.865169_g52415_i0 PRJNA603943 52607 251 0.865169 2.17157419 Kofleriaceae bacterium 2212474 Bacteria Bacteria 96.3 3.6100000000000005e-21   NR MEO6774999.1 2212474 g52415 i0 60.2 1.9840637450199201 83 31 99.2 2 250 2 255 335 MEO6774999.1 hypothetical protein [Kofleriaceae bacterium] diamond 498 96.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29195895 29195895 PRJNA603943_P_NODE_44349_length_278_cov_1.058537_g44157_i0 PRJNA603943 44349 278 1.058537 2.94273286 Pendulispora albinea 2741071 Bacteria Bacteria 83.6 2.44e-17   NR WP_394822069.1 2741071 g44157 i0 51.7 2.23381294964029 87 41 92.8 1 260 3 4 90 WP_394822069.1 MlaC/ttg2D family ABC transporter substrate-binding protein [Pendulispora albinea] diamond 621 83.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
29227570 29227570 PRJNA603943_P_NODE_59369_length_247_cov_1.091954_g59177_i0 PRJNA603943 59369 247 1.091954 2.69712638 Myxococcales bacterium 2026763 Bacteria Bacteria 68.2 3.78e-11   NR MBL8612221.1 2026763 g59177 i0 49.4 1.91902834008097 79 34 94.7 3 246 13 154 227 MBL8612221.1 PEGA domain-containing protein [Myxococcales bacterium] diamond 474 68.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29511350 29511350 PRJNA603943_P_NODE_45490_length_274_cov_1.333333_g45298_i0 PRJNA603943 45490 274 1.333333 3.65333242 Polyangiaceae bacterium 2268199 Bacteria Bacteria 147 7.73e-42   NR MFO0669622.1 2268199 g45298 i0 83.3 1.97080291970803 90 15 98.5 0 272 3 66 155 MFO0669622.1 hypothetical protein [Polyangiaceae bacterium] diamond 540 147 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29763909 29763909 PRJNA603943_P_NODE_62531_length_245_cov_1.511628_g62339_i0 PRJNA603943 62531 245 1.511628 3.7034886 Sandaracinus sp. 2024858 Bacteria Bacteria 141 1.9199999999999998e-40   NR MFO0711652.1 2024858 g62339 i0 82.7 3.95510204081633 81 14 99.2 0 245 3 110 190 MFO0711652.1 winged helix-turn-helix domain-containing protein [Sandaracinus sp.] diamond 969 141 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
29858752 29858752 PRJNA603943_P_NODE_41591_length_286_cov_1.422535_g41399_i0 PRJNA603943 41591 286 1.422535 4.0684501 Polyangiaceae bacterium 2268199 Bacteria Bacteria 65.5 5.27e-10   NR MEO7111969.1 2268199 g41399 i0 50.8 0.63986013986014 61 27 60.8 1 175 2 36 96 MEO7111969.1 S1 family peptidase [Polyangiaceae bacterium] diamond 183 65.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30838268 30838268 PRJNA603943_P_NODE_66254_length_243_cov_0.905882_g66062_i0 PRJNA603943 66254 243 0.905882 2.20129326 Labilithrix sp. 1971228 Bacteria Bacteria 97.8 1.5300000000000002e-21   NR HSO31943.1 1971228 g66062 i0 66.3 0.987654320987654 80 26 98.8 1 3 242 354 432 HSO31943.1 DUF5682 family protein [Labilithrix sp.] diamond 240 97.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31059736 31059736 PRJNA603943_P_NODE_42915_length_282_cov_1.464115_g42723_i0 PRJNA603943 42915 282 1.464115 4.1288043 Myxococcales bacterium 2026763 Bacteria Bacteria 109 1.72e-25   NR MBL8606167.1 2026763 g42723 i0 55.7 0.936170212765957 88 39 93.6 0 2 265 823 910 MBL8606167.1 hypothetical protein [Myxococcales bacterium] diamond 264 109 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31502305 31502305 PRJNA603943_P_NODE_69596_length_241_cov_0.916667_g69404_i0 PRJNA603943 69596 241 0.916667 2.20916747 Labilithrix sp. 1971228 Bacteria Bacteria 45.1 0.00509   NR MBX3186330.1 1971228 g69404 i0 41.5 0.659751037344398 53 31 66 0 162 4 177 229 MBX3186330.1 hypothetical protein [Labilithrix sp.] diamond 159 45.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31628562 31628562 PRJNA603943_P_NODE_42816_length_282_cov_2.205742_g42624_i0 PRJNA603943 42816 282 2.205742 6.22019244 Myxococcaceae bacterium 2484252 Bacteria Bacteria 145 1.33e-38   NR MDB5213087.1 2484252 g42624 i0 81 0.893617021276596 84 16 89.4 0 3 254 460 543 MDB5213087.1 regulator of chromosome condensation [Myxococcaceae bacterium] diamond 252 145 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
32293368 32293368 PRJNA603943_P_NODE_68679_length_242_cov_0.911243_g68487_i0 PRJNA603943 68679 242 0.911243 2.20520806 Labilithrix sp. 1971228 Bacteria Bacteria 72 1.15e-12   NR MDB4943484.1 1971228 g68487 i0 57.4 1.64876033057851 68 29 84.3 0 35 238 35 102 MDB4943484.1 helix-turn-helix protein [Labilithrix sp.] diamond 399 72 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32324936 32324936 PRJNA603943_P_NODE_23639_length_360_cov_0.989547_g23447_i0 PRJNA603943 23639 360 0.989547 3.5623692 Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis 2590453 Bacteria Bacteria 67 1.19e-10   NR WP_141648050.1 2590453 g23447 i0 40.2 2.14166666666667 107 48 89.2 3 360 40 121 211 WP_141648050.1 glycoside hydrolase family 19 protein [Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis] diamond 771 67 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis
32419593 32419593 PRJNA603943_P_NODE_41039_length_288_cov_1.120930_g40847_i0 PRJNA603943 41039 288 1.12093 3.2282784 Labilithrix sp. 1971228 Bacteria Bacteria 147 3.5e-39   NR HSO35327.1 1971228 g40847 i0 81.1 0.989583333333333 95 18 99 0 2 286 199 293 HSO35327.1 ABC transporter ATP-binding protein [Labilithrix sp.] diamond 285 147 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32640420 32640420 PRJNA603943_P_NODE_67920_length_242_cov_0.911243_g67728_i0 PRJNA603943 67920 242 0.911243 2.20520806 Polyangiaceae bacterium 2268199 Bacteria Bacteria 66.6 1.45e-10   NR MCL2779080.1 2268199 g67728 i0 46.8 1.95867768595041 79 41 97.9 1 239 3 3550 3627 MCL2779080.1 tetratricopeptide repeat protein [Polyangiaceae bacterium] diamond 474 66.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32811274 32811274 PRJNA603943_P_NODE_64400_length_244_cov_0.900585_g64208_i0 PRJNA603943 64400 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 47.4 8.86e-4   NR HWL85915.1 2268199 g64208 i0 48.9 1.30327868852459 45 23 55.3 0 5 139 514 558 HWL85915.1 DEAD/DEAH box helicase [Polyangiaceae bacterium] diamond 318 47.8 0.99163179916318 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32892437 32892437 PRJNA603943_P_NODE_54440_length_250_cov_0.870056_g54248_i0 PRJNA603943 54440 250 0.870056 2.17514 Labilithrix sp. 1971228 Bacteria Bacteria 127 5.219999999999999e-32   NR HSO40759.1 1971228 g54248 i0 69.1 0.972 81 25 97.2 0 3 245 337 417 HSO40759.1 glycosyltransferase family 2 protein [Labilithrix sp.] diamond 243 127 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;