RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA603943" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14606632 14606632 PRJNA603943_P_NODE_5612_length_642_cov_2.182777_g5427_i0 PRJNA603943 5612 642 2.182777 14.01342834 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 140 1.72e-36   NR KRX10107.1 266149 g5427 i0 59.3 0.925233644859813 108 37 47.2 1 2 304 225 332 KRX10107.1 hypothetical protein PPERSA_08510 [Pseudocohnilembus persalinus] diamond 594 140 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31312225 31312225 PRJNA603943_P_NODE_29715_length_330_cov_1.198444_g29523_i0 PRJNA603943 29715 330 1.198444 3.9548652 Paramecium pentaurelia 43138 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.0164   NR CAD8140396.1 43138 g29523 i0 26 4.13636363636364 104 46 94.5 1 7 318 1040 1112 CAD8140396.1 unnamed protein product [Paramecium pentaurelia] diamond 1365 45.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium pentaurelia
31578693 31578693 PRJNA603943_P_NODE_70056_length_241_cov_0.916667_g69864_i0 PRJNA603943 70056 241 0.916667 2.20916747 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 96.7 3.9200000000000006e-21   NR OMJ87241.1 5963 g69864 i0 58.7 9.53526970954357 75 31 93.4 0 1 225 196 270 OMJ87241.1 hypothetical protein SteCoe_11087 [Stentor coeruleus] diamond 2298 97.4 0.992813141683778 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
32451457 32451457 PRJNA603943_P_NODE_69899_length_241_cov_0.916667_g69707_i0 PRJNA603943 69899 241 0.916667 2.20916747 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 64.7 5.99e-11   NR XP_001432119.1 5888 g69707 i0 51.6 2.39004149377593 64 30 78.4 1 195 7 62 125 XP_001432119.1 uncharacterized protein GSPATT00034199001 [Paramecium tetraurelia] diamond 576 64.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;