RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA603943" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA603943 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6246773 6246773 PRJNA603943_P_NODE_32045_length_321_cov_1.173387_g31853_i0 PRJNA603943 32045 321 1.173387 3.76657227 Ochotona 9977 Chordata Chordata 144 2.2999999999999998e-38   NR XP_058513196.1 9978 g31853 i0 70.8 30.6822429906542 106 31 99.1 0 3 320 287 392 XP_058513196.1 3-ketoacyl-CoA thiolase, peroxisomal isoform X2 [Ochotona princeps] diamond 9849 144 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
23530520 23530520 PRJNA603943_P_NODE_66999_length_243_cov_0.905882_g66807_i0 PRJNA603943 66999 243 0.905882 2.20129326 Opisthokonta 33154 Chordata Chordata 118 7.5e-29   NR CAB3237154.1 59560 g66807 i0 68.8 8.69135802469136 77 24 95.1 0 6 236 407 483 CAB3237154.1 ATP-dependent RNA helicase dbp2 [Phallusia mammillata] diamond 2112 119 0.991596638655462 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
26840353 26840353 PRJNA603943_P_NODE_38681_length_296_cov_1.381166_g38489_i0 PRJNA603943 38681 296 1.381166 4.08825136 Opisthokonta 33154 Chordata Chordata 161 2e-45   NR XP_053551836.1 8345 g38489 i0 79.6 23.8074324324324 98 20 99.3 0 295 2 89 186 XP_053551836.1 cysteine desulfurase [Bombina bombina] diamond 7047 161 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
27396214 27396214 PRJNA603943_P_NODE_24063_length_357_cov_1.591549_g23871_i0 PRJNA603943 24063 357 1.591549 5.68182993 Chloroceryle aenea 176938 Chordata Chordata 45.1 0.0203   NR NXI48764.1 176938 g23871 i0 37 0.613445378151261 73 42 58.8 2 50 259 433 504 NXI48764.1 GP149 protein [Chloroceryle aenea] diamond 219 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Coraciiformes Cerylidae Chloroceryle Chloroceryle aenea
27712204 27712204 PRJNA603943_P_NODE_37364_length_301_cov_1.013158_g37172_i0 PRJNA603943 37364 301 1.013158 3.04960558 Branchiostoma floridae 7739 Chordata Chordata 56.6 8.77e-7   NR XP_035687788.1 7739 g37172 i0 48.9 0.46843853820598 47 23 46.8 1 289 149 84 129 XP_035687788.1 multiple epidermal growth factor-like domains protein 6 [Branchiostoma floridae] diamond 141 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27743652 27743652 PRJNA603943_P_NODE_65004_length_244_cov_0.900585_g64812_i0 PRJNA603943 65004 244 0.900585 2.1974274 Pogona vitticeps 103695 Chordata Chordata 44.7 0.00487   NR XP_020665876.1 103695 g64812 i0 45.8 0.590163934426229 48 24 56.6 2 1 138 63 110 XP_020665876.1 probable RNA-binding protein EIF1AD [Pogona vitticeps] diamond 144 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Agamidae Pogona Pogona vitticeps
27996062 27996062 PRJNA603943_P_NODE_55705_length_250_cov_0.870056_g55513_i0 PRJNA603943 55705 250 0.870056 2.17514 Engystomops pustulosus 76066 Chordata Chordata 76.6 4.84e-14   NR KAG8571490.1 76066 g55513 i0 57 3.792 79 34 94.8 0 14 250 1011 1089 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 948 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28009376 28009376 PRJNA603943_P_NODE_53585_length_251_cov_0.865169_g53393_i0 PRJNA603943 53585 251 0.865169 2.17157419 Metazoa 33208 Chordata Chordata 46.6 0.00174   NR NP_001414275.1 10090 g53393 i0 31.8 5.05577689243028 85 50 94.4 2 2 238 208 290 NP_001414275.1 pleckstrin homology domain-containing family A member 2 isoform 1 [Mus musculus] diamond 1269 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28974856 28974856 PRJNA603943_P_NODE_13748_length_443_cov_1.964865_g13556_i0 PRJNA603943 13748 443 1.964865 8.70435195 Hypanus sabinus 79690 Chordata Chordata 57.4 2.31e-6   NR XP_059816063.1 79690 g13556 i0 36.4 1.41534988713318 107 59 68.4 3 41 343 170 273 XP_059816063.1 uncharacterized protein LOC132387718 [Hypanus sabinus] diamond 627 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
30396372 30396372 PRJNA603943_P_NODE_54593_length_250_cov_0.870056_g54401_i0 PRJNA603943 54593 250 0.870056 2.17514 Chiloscyllium punctatum 137246 Chordata Chordata 91.7 4.46e-22   NR GCC48393.1 137246 g54401 i0 65.6 1.272 64 22 76.8 0 59 250 1 64 GCC48393.1 hypothetical protein [Chiloscyllium punctatum] diamond 318 91.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium punctatum
30775234 30775234 PRJNA603943_P_NODE_29094_length_333_cov_1.092308_g28902_i0 PRJNA603943 29094 333 1.092308 3.63738564 Clavelina lepadiformis 159417 Chordata Chordata 164 5.059999999999999e-46   NR CAK8676928.1 159417 g28902 i0 67 1.96396396396396 109 36 98.2 0 329 3 160 268 CAK8676928.1 unnamed protein product [Clavelina lepadiformis] diamond 654 164 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
31818306 31818306 PRJNA603943_P_NODE_46637_length_270_cov_1.532995_g46445_i0 PRJNA603943 46637 270 1.532995 4.1390865 Mesoplodon densirostris 48708 Chordata Chordata 43.9 0.0185   NR XP_059948101.1 48708 g46445 i0 39.1 0.511111111111111 46 28 51.1 0 250 113 116 161 XP_059948101.1 LOW QUALITY PROTEIN: olfactory receptor 10H3-like [Mesoplodon densirostris] diamond 138 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Ziphiidae Mesoplodon Mesoplodon densirostris
32261652 32261652 PRJNA603943_P_NODE_46298_length_271_cov_1.555556_g46106_i0 PRJNA603943 46298 271 1.555556 4.21555676 Engystomops pustulosus 76066 Chordata Chordata 61.6 1.22e-8   NR KAG8571490.1 76066 g46106 i0 48.2 6.58671586715867 85 44 94.1 0 255 1 1009 1093 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 1785 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
32861041 32861041 PRJNA603943_P_NODE_26080_length_347_cov_0.912409_g25888_i0 PRJNA603943 26080 347 0.912409 3.16605923 Styela clava 7725 Chordata Chordata 62.8 7.78e-9   NR XP_039263126.1 7725 g25888 i0 34 0.838616714697406 97 60 82.1 3 290 6 93 187 XP_039263126.1 uncharacterized protein LOC120339116 isoform X2 [Styela clava] diamond 291 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;