RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA603943" and tax_phylum = "Candidatus Doudnaibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Doudnaibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29890607 29890607 PRJNA603943_P_NODE_9631_length_513_cov_1.400000_g9441_i0 PRJNA603943 9631 513 1.4 7.182 Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_ 2052150 Bacteria Bacteria 118 8.28e-28   NR OGE80686.1 1817822 g9441 i0 46.3 1.75438596491228 149 79 86.5 1 13 456 127 275 OGE80686.1 MAG: hypothetical protein A2826_01100 [Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_43_23] diamond 900 118 1 Bacteria Bacteria candidate phyla   Candidatus Doudnaibacteriota         Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_43_23

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;