RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA603943" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29808789 29808789 PRJNA603943_P_NODE_15711_length_420_cov_2.219020_g15519_i0 PRJNA603943 15711 420 2.21902 9.319884 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 137 2.8e-39   NR XP_013436144.1 51315 g15519 i0 73 13.7357142857143 89 24 63.6 0 416 150 10 98 XP_013436144.1 60S ribosomal protein L37, putative [Eimeria necatrix] diamond 5769 137 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
31325525 31325525 PRJNA603943_P_NODE_58635_length_248_cov_0.880000_g58443_i0 PRJNA603943 58635 248 0.88 2.1824 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 89 2.14e-18   NR ESS33571.1 432359 g58443 i0 59.8 2.9758064516129 82 27 99.2 2 247 2 479 554 ESS33571.1 phosphodiesterase/alkaline phosphatase D family protein [Toxoplasma gondii VEG] diamond 738 89 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
32766544 32766544 PRJNA603943_P_NODE_48820_length_263_cov_1.268421_g48628_i0 PRJNA603943 48820 263 1.268421 3.33594723 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 77.4 2.81e-14   NR XP_026190971.1 88456 g48628 i0 43.7 2.97718631178707 87 45 98.1 2 6 263 322 405 XP_026190971.1 phytepsin-like [Cyclospora cayetanensis] diamond 783 77.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;