RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA602115" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA602115 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23528044 23528044 PRJNA602115_P_NODE_11659_length_201_cov_0.914286_g11634_i0 PRJNA602115 11659 201 0.914286 1.83771486 Naematelia encephala 71784 Fungi Fungi 110 3.0400000000000004e-27   NR ORY26279.1 71784 g11634 i0 80.3 0.985074626865672 66 13 98.5 0 3 200 246 311 ORY26279.1 glyceraldehyde-3-phosphate dehydrogenase [Naematelia encephala] diamond 198 110 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Naemateliaceae Naematelia Naematelia encephala
29903787 29903787 PRJNA602115_P_NODE_9471_length_207_cov_1.315068_g9446_i0 PRJNA602115 9471 207 1.315068 2.72219076 Eukaryota 2759 Fungi Fungi 74.3 1.68e-13   NR XP_014658689.1 84753 g9446 i0 61.8 4.89855072463768 68 26 98.6 0 3 206 692 759 XP_014658689.1 60S ribosomal protein L24 [Moesziomyces antarcticus] diamond 1014 74.7 0.994645247657296 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Moesziomyces Moesziomyces antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;