RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA600413" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA600413 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28722186 28722186 PRJNA600413_P_NODE_136127_length_163_cov_0.894737_g135426_i0 PRJNA600413 136127 163 0.894737 1.45842131 Caldisphaera sp. 2060322 Archaea Archaea 53.9 1.44e-6   NR MDP8003239.1 2060322 g135426 i0 50 2.68711656441718 52 26 95.7 0 156 1 62 113 MDP8003239.1 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein [Caldisphaera sp.] diamond 438 53.9 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Acidilobales Caldisphaeraceae Caldisphaera Caldisphaera sp.
30964741 30964741 PRJNA600413_P_NODE_66254_length_189_cov_1.321429_g65553_i0 PRJNA600413 66254 189 1.321429 2.49750081 Thermoproteota archaeon 2056631 Archaea Archaea 92.4 1.52e-21   NR MDQ1280918.1 2056631 g65553 i0 90.2 0.80952380952381 51 5 81 0 154 2 1 51 MDQ1280918.1 uncharacterized protein [Thermoproteota archaeon] diamond 153 92.4 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;