RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA600413" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4402531 4402531 PRJNA600413_P_NODE_68344_length_187_cov_2.094203_g67643_i0 PRJNA600413 68344 187 2.094203 3.91615961 Metazoa 33208 Nematoda Nematoda 114 1.46e-27   NR KAL1232489.1 6334 g67643 i0 98.4 192.577540106952 61 1 97.9 0 185 3 779 839 KAL1232489.1 Homeobox protein extradenticle [Trichinella spiralis] diamond 36012 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
27093210 27093210 PRJNA600413_P_NODE_139122_length_162_cov_0.902655_g138421_i0 PRJNA600413 139122 162 0.902655 1.4623011 Metazoa 33208 Nematoda Nematoda 44.3 0.00246   NR EJW71911.1 6293 g138421 i0 52.8 3.77777777777778 36 17 66.7 0 3 110 5 40 EJW71911.1 hypothetical protein WUBG_17182, partial [Wuchereria bancrofti] diamond 612 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
30142759 30142759 PRJNA600413_P_NODE_38892_length_231_cov_1.203297_g38191_i0 PRJNA600413 38892 231 1.203297 2.77961607 Aphelenchoides avenae 70226 Nematoda Nematoda 83.6 1.33e-16   NR KAH7711067.1 70226 g38191 i0 56.9 4.67532467532468 72 31 93.5 0 2 217 478 549 KAH7711067.1 putative reverse transcriptase - house mosquito [Aphelenchoides avenae] diamond 1080 83.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;