RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA600413" and tax_phylum = "Candidatus Liptoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Liptoniibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27237885 27237885 PRJNA600413_P_NODE_108423_length_166_cov_1.743590_g107722_i0 PRJNA600413 108423 166 1.74359 2.8943594 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 102 1.7e-25   NR MBI4085798.1 2528273 g107722 i0 81.8 2.98192771084337 55 10 99.4 0 2 166 22 76 MBI4085798.1 adenylyltransferase/cytidyltransferase family protein [Candidatus Liptonbacteria bacterium] diamond 495 102 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium
29006671 29006671 PRJNA600413_P_NODE_76168_length_182_cov_1.533835_g75467_i0 PRJNA600413 76168 182 1.533835 2.7915797 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 89.7 3.17e-21   NR MBI2888993.1 2528273 g75467 i0 72.4 0.956043956043956 58 16 95.6 0 179 6 29 86 MBI2888993.1 VOC family protein [Candidatus Liptonbacteria bacterium] diamond 174 89.7 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;