RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA600413" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26604879 26604879 PRJNA600413_P_NODE_77781_length_181_cov_1.545455_g77080_i0 PRJNA600413 77781 181 1.545455 2.79727355 Capitella teleta 283909 Annelida Annelida 57.8 8.1e-8   NR ELT91461.1 283909 g77080 i0 47.4 2.83425414364641 57 30 94.5 0 178 8 89 145 ELT91461.1 hypothetical protein CAPTEDRAFT_196521, partial [Capitella teleta] diamond 513 57.8 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta   Capitellidae Capitella Capitella teleta
29366970 29366970 PRJNA600413_P_NODE_39409_length_230_cov_1.011050_g38708_i0 PRJNA600413 39409 230 1.01105 2.325415 Metazoa 33208 Annelida Annelida 125 6.269999999999999e-32   NR KAI0240103.1 104711 g38708 i0 75 9.91304347826087 76 19 99.1 0 229 2 375 450 KAI0240103.1 hypothetical protein LSAT2_009185 [Lamellibrachia satsuma] diamond 2280 125 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Siboglinidae Lamellibrachia Lamellibrachia satsuma
30314883 30314883 PRJNA600413_P_NODE_112092_length_166_cov_0.871795_g111391_i0 PRJNA600413 112092 166 0.871795 1.4471797 Metazoa 33208 Annelida Annelida 112 3.1200000000000003e-27   NR CAH1795223.1 6347 g111391 i0 96.3 141.506024096386 54 2 97.6 0 3 164 335 388 CAH1795223.1 unnamed protein product, partial [Owenia fusiformis] diamond 23490 113 0.991150442477876 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;