RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA600413" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3126115 3126115 PRJNA600413_P_NODE_82103_length_178_cov_2.093023_g81402_i0 PRJNA600413 82103 178 2.093023 3.72558094 Prototheca wickerhamii 3111 Plants Plants 107 2.6600000000000003e-27   NR KAK2077382.1 3111 g81402 i0 100 0.960674157303371 57 0 96.1 0 2 172 169 225 KAK2077382.1 hypothetical protein QBZ16_004227 [Prototheca wickerhamii] diamond 171 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
29479562 29479562 PRJNA600413_P_NODE_66430_length_189_cov_1.092857_g65729_i0 PRJNA600413 66430 189 1.092857 2.06549973 Chlamydomonas eustigma 1157962 Plants Plants 49.3 8.99e-5   NR GAX78925.1 1157962 g65729 i0 42.3 0.825396825396825 52 24 73 2 138 1 396 447 GAX78925.1 hypothetical protein CEUSTIGMA_g6364.t1 [Chlamydomonas eustigma] diamond 156 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
30743413 30743413 PRJNA600413_P_NODE_126554_length_164_cov_0.886957_g125853_i0 PRJNA600413 126554 164 0.886957 1.45460948 Coccomyxa elongata 1965095 Plants Plants 50.1 3.3e-5   NR CAL8465704.1 1965095 g125853 i0 78.6 0.51219512195122 28 6 51.2 0 2 85 440 467 CAL8465704.1 g5240 [Coccomyxa elongata] diamond 84 50.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;